################################################################################################################################################################## Running command:###### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LinTInd###############################################################################################################################################################* checking for file ‘LinTInd/DESCRIPTION’ ... OK* preparing ‘LinTInd’:* checking DESCRIPTION meta-information ... OK* installing the package to build vignettes* creating vignettes ... ERROR--- re-building ‘tutorial.Rmd’ using rmarkdownQuitting from tutorial.Rmd:70-73 [find indels and generate array-form strings]~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<error/rlang_error>Error in `checkForRemoteErrors()`:! one node produced an error: error in evaluating the argument 'subject' in selecting a method for function 'matchPattern': pattern() has moved from Biostrings to the pwalign package, and is formally defunct in Biostrings >= 2.77.1. Please call pwalign::pattern() to get rid of this error.---Backtrace: ▆ 1. └─LinTInd::FindIndel(...) 2. └─parallel::parLapply(cl, data$Read.Seq, find_barcode) 3. ├─base::do.call(...) 4. └─parallel::clusterApply(...) 5. └─parallel:::staticClusterApply(cl, fun, length(x), argfun) 6. └─parallel:::checkForRemoteErrors(val)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Error: processing vignette 'tutorial.Rmd' failed with diagnostics:one node produced an error: error in evaluating the argument 'subject' in selecting a method for function 'matchPattern': pattern() has moved from Biostrings to the pwalign package, and is formally defunct in Biostrings >= 2.77.1. Please call pwalign::pattern() to get rid of this error.--- failed re-building ‘tutorial.Rmd’SUMMARY: processing the following file failed: ‘tutorial.Rmd’Error: Vignette re-building failed.Execution halted