Movatterモバイル変換

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:LEA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings LEA_3.22.0.tar.gz###############################################################################################################################################################* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/LEA.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-apple-darwin20* R was compiled by    Apple clang version 14.0.0 (clang-1400.0.29.202)    GNU Fortran (GCC) 14.2.0* running under: macOS Monterey 12.7.6* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘LEA/DESCRIPTION’ ... OK* this is package ‘LEA’ version ‘3.22.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘LEA’ can be installed ... OK* used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’* used SDK: ‘MacOSX11.3.1.sdk’* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking data for ASCII and uncompressed saves ... OK* checking line endings in C/C++/Fortran sources/headers ... OK* checking line endings in Makefiles ... OK* checking compilation flags in Makevars ... OK* checking for GNU extensions in Makefiles ... OK* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK* checking use of PKG_*FLAGS in Makefiles ... OK* checking compiled code ... NOTENote: information on .o files is not available* checking sizes of PDF files under ‘inst/doc’ ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s               user system elapsedmain_LFMM    95.503  0.405 102.143lfmm_pvalues 15.959  0.096  16.901zscores      15.828  0.088  16.244main_sNMF    11.475  2.907  17.678readZscore    7.936  0.038   8.275* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 1 NOTESee  ‘/Users/biocbuild/bbs-3.22-bioc/meat/LEA.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL LEA###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’* installing *source* package ‘LEA’ ...** this is package ‘LEA’ version ‘3.22.0’** using staged installation** libsusing C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’using SDK: ‘MacOSX11.3.1.sdk’clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_LFMM.c -o R_LFMM.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_crossEntropy.c -o R_crossEntropy.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_createDataSet.c -o R_createDataSet.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_sNMF.c -o R_sNMF.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_ancestrymap2geno.c -o R_ancestrymap2geno.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_ancestrymap2lfmm.c -o R_ancestrymap2lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_geno2lfmm.c -o R_geno2lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_lfmm2geno.c -o R_lfmm2geno.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_pca.c -o R_pca.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_ped2geno.c -o R_ped2geno.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_ped2lfmm.c -o R_ped2lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_vcf2geno.c -o R_vcf2geno.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_tracyWidom.c -o R_tracyWidom.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_LEA.c -o R_init_LEA.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bituint/bituint.c -o bituint/bituint.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bituint/calc_bituint.c -o bituint/calc_bituint.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bituint/io_geno_bituint.c -o bituint/io_geno_bituint.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bituint/slice_bituint.c -o bituint/slice_bituint.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bituint/thread_bituint.c -o bituint/thread_bituint.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c convert/ancestrymap.c -o convert/ancestrymap.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c convert/geno.c -o convert/geno.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c convert/ped.c -o convert/ped.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c convert/vcf2geno.c -o convert/vcf2geno.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c convert/geno2lfmm.c -o convert/geno2lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c convert/lfmm2geno.c -o convert/lfmm2geno.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c convert/register_convert.c -o convert/register_convert.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c createDataSet/createDataSet.c -o createDataSet/createDataSet.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c createDataSet/error_cds.c -o createDataSet/error_cds.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c createDataSet/print_cds.c -o createDataSet/print_cds.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c createDataSet/register_cds.c -o createDataSet/register_cds.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c crossEntropy/crossEntropy.c -o crossEntropy/crossEntropy.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c crossEntropy/error_ce.c -o crossEntropy/error_ce.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c crossEntropy/print_ce.c -o crossEntropy/print_ce.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c crossEntropy/register_ce.c -o crossEntropy/register_ce.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io/io_data_double.c -o io/io_data_double.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io/io_data_float.c -o io/io_data_float.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io/io_data_int.c -o io/io_data_int.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io/io_error.c -o io/io_error.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io/io_tools.c -o io/io_tools.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io/print_bar.c -o io/print_bar.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/beta.c -o LFMM/beta.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/error_lfmm.c -o LFMM/error_lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/lfmm_k0.c -o LFMM/lfmm_k0.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/slice_lfmm.c -o LFMM/slice_lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/U.c -o LFMM/U.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/beta_k0.c -o LFMM/beta_k0.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/lfmm_algo.c -o LFMM/lfmm_algo.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/print_lfmm.c -o LFMM/print_lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/thread_lfmm.c -o LFMM/thread_lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/V.c -o LFMM/V.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/data_lfmm.c -o LFMM/data_lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/LFMM.c -o LFMM/LFMM.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/register_lfmm.c -o LFMM/register_lfmm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c LFMM/thread_var.c -o LFMM/thread_var.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/cholesky.c -o matrix/cholesky.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/error_matrix.c -o matrix/error_matrix.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/normalize.c -o matrix/normalize.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/slice_matrix.c -o matrix/slice_matrix.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/data.c -o matrix/data.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/inverse.c -o matrix/inverse.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/rand.c -o matrix/rand.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/sylvester.c -o matrix/sylvester.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/diagonalize.c -o matrix/diagonalize.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/matrix.c -o matrix/matrix.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/random_projection.c -o matrix/random_projection.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c matrix/thread_matrix.c -o matrix/thread_matrix.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c nnlsm/blockpivot.c -o nnlsm/blockpivot.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c nnlsm/nnlsm.c -o nnlsm/nnlsm.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c nnlsm/solvenormaleqcomb.c -o nnlsm/solvenormaleqcomb.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c nnlsm/sort.c -o nnlsm/sort.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c pca/calc_cov.c -o pca/calc_cov.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c pca/error_pca.c -o pca/error_pca.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c pca/pca.c -o pca/pca.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c pca/print_pca.c -o pca/print_pca.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c pca/register_pca.c -o pca/register_pca.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/als.c -o sNMF/als.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/als_k1.c -o sNMF/als_k1.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/criteria.c -o sNMF/criteria.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/print_snmf.c -o sNMF/print_snmf.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/sNMF.c -o sNMF/sNMF.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/thread_Q.c -o sNMF/thread_Q.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/als_F.c -o sNMF/als_F.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/als_Q.c -o sNMF/als_Q.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/error_snmf.c -o sNMF/error_snmf.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/register_snmf.c -o sNMF/register_snmf.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/thread_F.c -o sNMF/thread_F.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sNMF/thread_snmf.c -o sNMF/thread_snmf.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/beta_distribution.c -o stats/beta_distribution.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/gamma_density.c -o stats/gamma_density.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/ln_beta_function.c -o stats/ln_beta_function.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/beta_function.c -o stats/beta_function.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/gamma_distribution.c -o stats/gamma_distribution.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/ln_gamma_function.c -o stats/ln_gamma_function.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/entire_incomplete_gamma_function.c -o stats/entire_incomplete_gamma_function.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/gamma_dist_tables.c -o stats/gamma_dist_tables.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/student_t_distribution.c -o stats/student_t_distribution.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/factorial.c -o stats/factorial.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c stats/gamma_function.c -o stats/gamma_function.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c tracyWidom/error_tracyWidom.c -o tracyWidom/error_tracyWidom.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c tracyWidom/register_tracyWidom.c -o tracyWidom/register_tracyWidom.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c tracyWidom/print_tracyWidom.c -o tracyWidom/print_tracyWidom.oclang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c tracyWidom/tracyWidom.c -o tracyWidom/tracyWidom.oclang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o LEA.so R_LFMM.o R_crossEntropy.o R_createDataSet.o R_sNMF.o R_ancestrymap2geno.o R_ancestrymap2lfmm.o R_geno2lfmm.o R_lfmm2geno.o R_pca.o R_ped2geno.o R_ped2lfmm.o R_vcf2geno.o R_tracyWidom.o R_init_LEA.o bituint/bituint.o bituint/calc_bituint.o bituint/io_geno_bituint.o bituint/slice_bituint.o bituint/thread_bituint.o convert/ancestrymap.o convert/geno.o convert/ped.o convert/vcf2geno.o convert/geno2lfmm.o convert/lfmm2geno.o convert/register_convert.o createDataSet/createDataSet.o createDataSet/error_cds.o createDataSet/print_cds.o createDataSet/register_cds.o crossEntropy/crossEntropy.o crossEntropy/error_ce.o crossEntropy/print_ce.o crossEntropy/register_ce.o io/io_data_double.o io/io_data_float.o io/io_data_int.o io/io_error.o io/io_tools.o io/print_bar.o LFMM/beta.o LFMM/error_lfmm.o LFMM/lfmm_k0.o LFMM/slice_lfmm.o LFMM/U.o LFMM/beta_k0.o LFMM/lfmm_algo.o LFMM/print_lfmm.o LFMM/thread_lfmm.o LFMM/V.o LFMM/data_lfmm.o LFMM/LFMM.o LFMM/register_lfmm.o LFMM/thread_var.o matrix/cholesky.o matrix/error_matrix.o matrix/normalize.o matrix/slice_matrix.o matrix/data.o matrix/inverse.o matrix/rand.o matrix/sylvester.o matrix/diagonalize.o matrix/matrix.o matrix/random_projection.o matrix/thread_matrix.o nnlsm/blockpivot.o nnlsm/nnlsm.o nnlsm/solvenormaleqcomb.o nnlsm/sort.o pca/calc_cov.o pca/error_pca.o pca/pca.o pca/print_pca.o pca/register_pca.o sNMF/als.o sNMF/als_k1.o sNMF/criteria.o sNMF/print_snmf.o sNMF/sNMF.o sNMF/thread_Q.o sNMF/als_F.o sNMF/als_Q.o sNMF/error_snmf.o sNMF/register_snmf.o sNMF/thread_F.o sNMF/thread_snmf.o stats/beta_distribution.o stats/gamma_density.o stats/ln_beta_function.o stats/beta_function.o stats/gamma_distribution.o stats/ln_gamma_function.o stats/entire_incomplete_gamma_function.o stats/gamma_dist_tables.o stats/student_t_distribution.o stats/factorial.o stats/gamma_function.o tracyWidom/error_tracyWidom.o tracyWidom/register_tracyWidom.o tracyWidom/print_tracyWidom.o tracyWidom/tracyWidom.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-LEA/00new/LEA/libs** R** data** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (LEA)