Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:IFAA.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings IFAA_1.12.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/IFAA.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘IFAA/DESCRIPTION’ ... OK* this is package ‘IFAA’ version ‘1.12.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘IFAA’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s        user system elapsedIFAA  23.271  1.329 112.001MZILN  1.711  0.095  22.740* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘runTests.R’ OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: OK

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL IFAA###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘IFAA’ ...** this is package ‘IFAA’ version ‘1.12.0’** using staged installation** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (IFAA)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: x86_64-pc-linux-gnuR is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> BiocGenerics:::testPackage("IFAA")Data dimensions (after removing missing data if any):40 samples20 taxa/OTU/ASV2 testCov variables in the analysisThese are the testCov variables:x1, x21 ctrlCov variables in the analysis These are the ctrlCov variables:x31 binary covariates in the analysisThese are the binary covariates:x2 25 percent of microbiome sequencing reads are zeroStart Phase 1 analysis2 parallel jobs are registered for the analysis.33 percent of phase 1 analysis has been done and it took 0.29 minutes2 parallel jobs are registered for the analysis.100 percent of phase 1 analysis has been done and it took 0.55 minutesStart Phase 2 parameter estimation2 parallel jobs are registered for analyzing reference taxa in Phase 250 percent of Phase 2 is done and it took 0.191 minutes2 parallel jobs are registered for analyzing reference taxa in Phase 2Entire Phase 2 parameter estimation done and took 0.381 minutes.The entire analysis took 0.94 minutesData dimensions (after removing missing data if any):40 samples20 taxa/OTU/ASV3 testCov variables in the analysisThese are the testCov variables:x1, x2, x30 ctrlCov variables in the analysis 1 binary covariates in the analysisThese are the binary covariates:x2 25 percent of microbiome sequencing reads are zero2 parallel jobs are registered for analyzing reference taxa in Phase 2Estimation done for the 1th denominator taxon: rawCount10 and it took 0.2 minutesThe entire analysis took 0.2 minutesData dimensions (after removing missing data if any):5 samples20 taxa/OTU/ASV2 testCov variables in the analysisThese are the testCov variables:x1, x24 ctrlCov variables in the analysis These are the ctrlCov variables:x3, x4, x5, x61 binary covariates in the analysisThese are the binary covariates:x2 0 percent of microbiome sequencing reads are zeroStart Phase 1 analysis2 parallel jobs are registered for the analysis.33 percent of phase 1 analysis has been done and it took 0.24 minutes2 parallel jobs are registered for the analysis.67 percent of phase 1 analysis has been done and it took 0.77 minutes2 parallel jobs are registered for the analysis.100 percent of phase 1 analysis has been done and it took 1.19 minutesStart Phase 2 parameter estimation2 parallel jobs are registered for analyzing reference taxa in Phase 250 percent of Phase 2 is done and it took 0.339 minutes2 parallel jobs are registered for analyzing reference taxa in Phase 2Entire Phase 2 parameter estimation done and took 0.671 minutes.The entire analysis took 1.86 minutesRUNIT TEST PROTOCOL -- Fri Dec 12 01:36:16 2025 *********************************************** Number of test functions: 3 Number of errors: 0 Number of failures: 0  1 Test Suite : IFAA RUnit Tests - 3 test functions, 0 errors, 0 failuresNumber of test functions: 3 Number of errors: 0 Number of failures: 0 > > proc.time()   user  system elapsed  45.042   2.600 187.963