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Back toMultiple platform build/check report for BioC 3.22:   simplified   long
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This page was generated on 2025-12-15 12:09 -0500 (Mon, 15 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble"4882
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble"4673
kjohnson1macOS 13.7.5 Venturaarm644.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"4607
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six"4671
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package889/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GLAD 2.74.0  (landing page)
Philippe Hupe
Snapshot Date: 2025-12-11 13:45 -0500 (Thu, 11 Dec 2025)
git_url: https://git.bioconductor.org/packages/GLAD
git_branch: RELEASE_3_22
git_last_commit: 9a31255
git_last_commit_date: 2025-10-29 09:55:26 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.7.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

INSTALL results for GLAD on taishan

To the developers/maintainers of the GLAD package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GLAD.git to reflect on this report. SeeTroubleshooting Build Report for more information.
- Use the followingRenviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.
- See Martin Grigorov'sblog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: GLAD
Version: 2.74.0
Command: /home/biocbuild/R/R/bin/R CMD INSTALL GLAD
StartedAt: 2025-12-11 21:04:14 -0000 (Thu, 11 Dec 2025)
EndedAt: 2025-12-11 21:04:40 -0000 (Thu, 11 Dec 2025)
EllapsedTime: 26.1 seconds
RetCode: 0
Status:  OK  

Command output

################################################################################################################################################################## Running command:######   /home/biocbuild/R/R/bin/R CMD INSTALL GLAD###############################################################################################################################################################* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’* installing *source* package ‘GLAD’ ...** this is package ‘GLAD’ version ‘2.74.0’** using staged installationchecking for pkg-config... /usr/bin/pkg-configchecking pkg-config is at least version 0.9.0... yeschecking for GSL... yesGSL has been found on the operating systemoperating system: Linuxconfigure: creating ./config.statusconfig.status: creating src/Makevarssrc/Makevars filePKG_LIBS = -lgsl -lgslcblas -lmPKG_CPPFLAGS = -I/usr/local/include** libsusing C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c BkpInfo.cpp -o BkpInfo.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c HaarSeg.cpp -o HaarSeg.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c MoveBkp.cpp -o MoveBkp.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c OutliersGNL.cpp -o OutliersGNL.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c chrBreakpoints.cpp -o chrBreakpoints.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c cutree.cpp -o cutree.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c daglad.cpp -o daglad.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c distance.cpp -o distance.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c filterBkp.cpp -o filterBkp.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c findCluster.cpp -o findCluster.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c glad-utils.cpp -o glad-utils.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c hclust.cpp -o hclust.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c laws.c -o laws.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c loopRemove.cpp -o loopRemove.o/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -lgsl -lgslcblas -lm -L/home/biocbuild/R/R-4.5.0/lib -lRinstalling to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-GLAD/00new/GLAD/libs** R** data** demo** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (GLAD)
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