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Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4882
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4673
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4607
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4671
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for GGPA on nebbiolo2

To the developers/maintainers of the GGPA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GGPA.git to reflect on this report. SeeTroubleshooting Build Report for more information.
- Use the followingRenviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.

raw results

Summary

Package: GGPA

Version: 1.22.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL GGPA

StartedAt: 2025-12-11 16:06:44 -0500 (Thu, 11 Dec 2025)

EndedAt: 2025-12-11 16:07:18 -0500 (Thu, 11 Dec 2025)

EllapsedTime: 34.0 seconds

RetCode: 0

Status: OK

Command output

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL GGPA###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘GGPA’ ...** this is package ‘GGPA’ version ‘1.22.0’** using staged installation** libsusing C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c 1_Main.cpp -o 1_Main.og++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c 3_Param.cpp -o 3_Param.o3_Param.cpp: In member function ‘void CParam::S6_G_beta_ij(CData&)’:3_Param.cpp:334:40: warning: ‘logP_numer’ may be used uninitialized [-Wmaybe-uninitialized]  334 |           if ( w_prop > 0 ) logP_numer = logP_numer - log(w_prop) ; // f(G^q) // if w_prop=0, let 1/w_prop = 1, so that log(w_prop) = 0      |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~3_Param.cpp:226:10: note: ‘logP_numer’ was declared here  226 |   double logP_numer, logP_denom ;      |          ^~~~~~~~~~3_Param.cpp:335:39: warning: ‘logP_denom’ may be used uninitialized [-Wmaybe-uninitialized]  335 |           if ( w_cur > 0 ) logP_denom = logP_denom - log(w_cur) ; // f(G) // if w_cur=0, let 1/w_cur = 1, so that log(w_cur) = 0      |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~3_Param.cpp:226:22: note: ‘logP_denom’ was declared here  226 |   double logP_numer, logP_denom ;      |                      ^~~~~~~~~~3_Param.cpp:350:47: warning: ‘normC_prop’ may be used uninitialized [-Wmaybe-uninitialized]  350 |     Beta = Beta_prop ; G_mat = G_prop ; normC = normC_prop ;      |                                         ~~~~~~^~~~~~~~~~~~3_Param.cpp:227:10: note: ‘normC_prop’ was declared here  227 |   double normC_prop ;      |          ^~~~~~~~~~g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c Gibbs_e_it_no_ann.cpp -o Gibbs_e_it_no_ann.og++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.og++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o GGPA.so 1_Main.o 3_Param.o Gibbs_e_it_no_ann.o RcppExports.o -llapack -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRinstalling to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-GGPA/00new/GGPA/libs** R** data** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (GGPA)