################################################################################################################################################################## Running command:###### rm -rf FEAST.buildbin-libdir && mkdir FEAST.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FEAST_1.18.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R FEAST.buildbin-libdir###############################################################################################################################################################>>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FEAST.buildbin-libdir FEAST_1.18.0.tar.gz'>>>>>>> * installing *source* package ‘FEAST’ ...** this is package ‘FEAST’ version ‘1.18.0’** using staged installation** libsusing C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’using SDK: ‘MacOSX11.3.1.sdk’clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cal_3_metrics.c -o cal_3_metrics.ocal_3_metrics.c:42:22: warning: variable 'ni_2' set but not used [-Wunused-but-set-variable] double *nc, *nr, ni_2, n_j2, nt, nij_2; ^cal_3_metrics.c:42:28: warning: variable 'n_j2' set but not used [-Wunused-but-set-variable] double *nc, *nr, ni_2, n_j2, nt, nij_2; ^cal_3_metrics.c:42:34: warning: variable 'nt' set but not used [-Wunused-but-set-variable] double *nc, *nr, ni_2, n_j2, nt, nij_2; ^cal_3_metrics.c:42:38: warning: variable 'nij_2' set but not used [-Wunused-but-set-variable] double *nc, *nr, ni_2, n_j2, nt, nij_2; ^4 warnings generated.clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o FEAST.so cal_3_metrics.o -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Users/biocbuild/bbs-3.22-bioc/meat/FEAST.buildbin-libdir/00LOCK-FEAST/00new/FEAST/libs** R** data*** moving datasets to lazyload DB** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (FEAST)>>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR FEAST.buildbin-libdir/FEAST/libs/FEAST.so>>>>>>> >>>>>>> Paths before fix:FEAST.buildbin-libdir/FEAST/libs/FEAST.so:FEAST.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)>>>>>>> Fix with install_name_tool:install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgcc_s.1.1.dylib" "FEAST.buildbin-libdir/FEAST/libs/FEAST.so"install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgfortran.5.dylib" "FEAST.buildbin-libdir/FEAST/libs/FEAST.so"install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libquadmath.0.dylib" "FEAST.buildbin-libdir/FEAST/libs/FEAST.so">>>>>>> Paths after fix:FEAST.buildbin-libdir/FEAST/libs/FEAST.so:FEAST.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)
