Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:CexoR.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings CexoR_1.48.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/CexoR.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘CexoR/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘CexoR’ version ‘1.48.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘CexoR’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... NOTELicense components with restrictions not permitted:  GPL-2 + file LICENSE* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTEcexor: no visible global function definition for ‘subsetByOverlaps’Undefined global functions or variables:  subsetByOverlaps* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s                user system elapsedCexoR-package 10.485  0.138  10.626cexor          9.107  0.032   9.140plotcexor      9.049  0.031   9.080* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘runTests.R’ OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: 2 NOTEsSee  ‘/home/biocbuild/bbs-3.22-bioc/meat/CexoR.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL CexoR###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘CexoR’ ...** this is package ‘CexoR’ version ‘1.48.0’** using staged installation** R** inst** byte-compile and prepare package for lazy loadingWarning: replacing previous import ‘Biostrings::pattern’ by ‘grid::pattern’ when loading ‘genomation’** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary locationWarning: replacing previous import ‘Biostrings::pattern’ by ‘grid::pattern’ when loading ‘genomation’** testing if installed package can be loaded from final locationWarning: replacing previous import ‘Biostrings::pattern’ by ‘grid::pattern’ when loading ‘genomation’** testing if installed package keeps a record of temporary installation path* DONE (CexoR)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: x86_64-pc-linux-gnuR is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> require("CexoR") || stop("unable to load CexoR")Loading required package: CexoRLoading required package: S4VectorsLoading required package: stats4Loading required package: BiocGenericsLoading required package: genericsAttaching package: 'generics'The following objects are masked from 'package:base':    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,    setequal, unionAttaching package: 'BiocGenerics'The following objects are masked from 'package:stats':    IQR, mad, sd, var, xtabsThe following objects are masked from 'package:base':    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,    as.data.frame, basename, cbind, colnames, dirname, do.call,    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,    unsplit, which.max, which.minAttaching package: 'S4Vectors'The following object is masked from 'package:utils':    findMatchesThe following objects are masked from 'package:base':    I, expand.grid, unnameLoading required package: IRanges[1] TRUEWarning message:replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation' > BiocGenerics:::testPackage("CexoR")RUNIT TEST PROTOCOL -- Thu Dec 11 22:56:28 2025 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0  1 Test Suite : CexoR RUnit Tests - 1 test function, 0 errors, 0 failuresNumber of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time()   user  system elapsed  20.243   0.739  20.973