Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/R/R/bin/R CMD check --install=check:CaMutQC.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings CaMutQC_1.6.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/CaMutQC.Rcheck’* using R version 4.5.0 (2025-04-11)* using platform: aarch64-unknown-linux-gnu* R was compiled by    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0    GNU Fortran (GCC) 14.2.0* running under: openEuler 24.03 (LTS)* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘CaMutQC/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘CaMutQC’ version ‘1.6.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘CaMutQC’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... NOTEFile  LICENSEis not mentioned in the DESCRIPTION file.* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTEmutFilterNormalDP: no visible binding for global variable  ‘Existing_variation’mutFilterNormalDP: no visible binding for global variable ‘n_depth’mutFilterNormalDP: no visible binding for global variable ‘rowname’Undefined global functions or variables:  Existing_variation n_depth rowname* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s               user system elapsedmutFilterReg 25.269  0.176  25.515calTMB        5.019  0.183   5.240* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 2 NOTEsSee  ‘/home/biocbuild/bbs-3.22-bioc/meat/CaMutQC.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /home/biocbuild/R/R/bin/R CMD INSTALL CaMutQC###############################################################################################################################################################* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’* installing *source* package ‘CaMutQC’ ...** this is package ‘CaMutQC’ version ‘1.6.0’** using staged installation** R** inst** byte-compile and prepare package for lazy loadingWarning: replacing previous import ‘ape::degree’ by ‘circlize::degree’ when loading ‘MesKit’Warning: replacing previous import ‘ape::where’ by ‘dplyr::where’ when loading ‘MesKit’Warning: replacing previous import ‘dplyr::count’ by ‘mclust::count’ when loading ‘MesKit’** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary locationWarning: replacing previous import ‘ape::degree’ by ‘circlize::degree’ when loading ‘MesKit’Warning: replacing previous import ‘ape::where’ by ‘dplyr::where’ when loading ‘MesKit’Warning: replacing previous import ‘dplyr::count’ by ‘mclust::count’ when loading ‘MesKit’** testing if installed package can be loaded from final locationWarning: replacing previous import ‘ape::degree’ by ‘circlize::degree’ when loading ‘MesKit’Warning: replacing previous import ‘ape::where’ by ‘dplyr::where’ when loading ‘MesKit’Warning: replacing previous import ‘dplyr::count’ by ‘mclust::count’ when loading ‘MesKit’** testing if installed package keeps a record of temporary installation path* DONE (CaMutQC)