Movatterモバイル変換

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CNORdt.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CNORdt_1.52.0.tar.gz###############################################################################################################################################################* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/CNORdt.Rcheck’* using R version 4.5.2 Patched (2025-11-04 r88984)* using platform: aarch64-apple-darwin20* R was compiled by    Apple clang version 16.0.0 (clang-1600.0.26.6)    GNU Fortran (GCC) 14.2.0* running under: macOS Ventura 13.7.8* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘CNORdt/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘CNORdt’ version ‘1.52.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘CNORdt’ can be installed ... OK* used C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’* used SDK: ‘MacOSX11.3.1.sdk’* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking dependencies in R code ... NOTEPackage in Depends field not imported from: ‘abind’  These packages need to be imported from (in the NAMESPACE file)  for when this namespace is loaded but not attached.* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTEgaBinaryDT: no visible global function definition for ‘runif’getFitDT: no visible global function definition for ‘splinefun’getFitDT: no visible global function definition for ‘optim’shift: no visible global function definition for ‘tail’shift: no visible global function definition for ‘head’Undefined global functions or variables:  head optim runif splinefun tailConsider adding  importFrom("stats", "optim", "runif", "splinefun")  importFrom("utils", "head", "tail")to your NAMESPACE file.* checking Rd files ... NOTEcheckRd: (-1) computeScoreDT.Rd:26: Lost braces    26 | A model structure, as created by code{readSIF}, normally pre-processed        |                                      ^* checking Rd metadata ... OK* checking Rd cross-references ... NOTEFound the following Rd file(s) with Rd \link{} targets missing packageanchors:  cutAndPlotResultsDT.Rd: plotOptimResultsPanPlease provide package anchors for all Rd \link{} targets not in thepackage itself and the base packages.* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking data for ASCII and uncompressed saves ... OK* checking line endings in C/C++/Fortran sources/headers ... OK* checking compiled code ... NOTENote: information on .o files is not available* checking sizes of PDF files under ‘inst/doc’ ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s                      user system elapsedcutAndPlotResultsDT 17.439  0.170  30.716gaBinaryDT          17.280  0.143  30.506* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 5 NOTEsSee  ‘/Users/biocbuild/bbs-3.22-bioc/meat/CNORdt.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CNORdt###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’* installing *source* package ‘CNORdt’ ...** this is package ‘CNORdt’ version ‘1.52.0’** using staged installation** libsusing C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’using SDK: ‘MacOSX11.3.1.sdk’clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c simulatorDT.c -o simulatorDT.osimulatorDT.c:243:19: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]                        if((track_cond == nCond)) {                            ~~~~~~~~~~~^~~~~~~~simulatorDT.c:243:19: note: remove extraneous parentheses around the comparison to silence this warning                        if((track_cond == nCond)) {                           ~           ^       ~simulatorDT.c:243:19: note: use '=' to turn this equality comparison into an assignment                        if((track_cond == nCond)) {                                       ^~                                       =simulatorDT.c:53:6: warning: unused variable 'nSignals' [-Wunused-variable]        int nSignals = INTEGER(nSignals_in)[0];            ^simulatorDT.c:55:6: warning: unused variable 'nTimes' [-Wunused-variable]        int nTimes = INTEGER(nTimes_in)[0];            ^3 warnings generated.clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o CNORdt.so simulatorDT.o -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-CNORdt/00new/CNORdt/libs** R** data** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (CNORdt)