| Back toMultiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-12-15 12:08 -0500 (Mon, 15 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4882 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4673 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4607 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package85/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AnVILAz 1.4.0 (landing page) Marcel Ramos
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| To the developers/maintainers of the AnVILAz package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnVILAz.git to reflect on this report. SeeTroubleshooting Build Report for more information. - Use the followingRenviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information. - See Martin Grigorov'sblog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: AnVILAz |
| Version: 1.4.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:AnVILAz.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings AnVILAz_1.4.0.tar.gz |
| StartedAt: 2025-12-12 07:34:00 -0000 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 07:35:15 -0000 (Fri, 12 Dec 2025) |
| EllapsedTime: 75.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: AnVILAz.Rcheck |
| Warnings: 0 |
################################################################################################################################################################## Running command:###### /home/biocbuild/R/R/bin/R CMD check --install=check:AnVILAz.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings AnVILAz_1.4.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/AnVILAz.Rcheck’* using R version 4.5.0 (2025-04-11)* using platform: aarch64-unknown-linux-gnu* R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0* running under: openEuler 24.03 (LTS)* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘AnVILAz/DESCRIPTION’ ... OK* this is package ‘AnVILAz’ version ‘1.4.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘AnVILAz’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking whether startup messages can be suppressed ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OK* checking for unstated dependencies in ‘tests’ ... OK* checking tests ... Running ‘tinytest.R’ OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: OK
AnVILAz.Rcheck/00install.out
################################################################################################################################################################## Running command:###### /home/biocbuild/R/R/bin/R CMD INSTALL AnVILAz###############################################################################################################################################################* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’* installing *source* package ‘AnVILAz’ ...** this is package ‘AnVILAz’ version ‘1.4.0’** using staged installation** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (AnVILAz)
AnVILAz.Rcheck/tests/tinytest.Rout
R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: aarch64-unknown-linux-gnuR is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> if (requireNamespace("tinytest", quietly = TRUE))+ tinytest::test_package("AnVILAz")test_avtable-methods.R........ 0 tests test_avtable-methods.R........ 0 tests test_avtable-methods.R........ 0 tests test_avtable-methods.R........ 0 tests [0;36m54ms[0mtest_avworkspace-methods.R.... 0 tests test_avworkspace-methods.R.... 0 tests test_avworkspace-methods.R.... 0 tests test_avworkspace-methods.R.... 0 tests [0;36m3ms[0mtest_az_copy.R................ 0 tests test_az_copy.R................ 0 tests test_az_copy.R................ 0 tests test_az_copy.R................ 0 tests [0;36m3ms[0mtest_az_copy_helpers.R........ 0 tests test_az_copy_helpers.R........ 0 tests test_az_copy_helpers.R........ 1 tests [0;32mOK[0m test_az_copy_helpers.R........ 2 tests [0;32mOK[0m test_az_copy_helpers.R........ 3 tests [0;32mOK[0m test_az_copy_helpers.R........ 4 tests [0;32mOK[0m test_az_copy_helpers.R........ 5 tests [0;32mOK[0m test_az_copy_helpers.R........ 5 tests [0;32mOK[0m test_az_copy_helpers.R........ 5 tests [0;32mOK[0m test_az_copy_helpers.R........ 6 tests [0;32mOK[0m test_az_copy_helpers.R........ 7 tests [0;32mOK[0m test_az_copy_helpers.R........ 8 tests [0;32mOK[0m test_az_copy_helpers.R........ 8 tests [0;32mOK[0m test_az_copy_helpers.R........ 9 tests [0;32mOK[0m test_az_copy_helpers.R........ 10 tests [0;32mOK[0m [0;36m16ms[0mAll ok, 10 results (80ms)> > proc.time() user system elapsed 0.984 0.063 1.037AnVILAz.Rcheck/AnVILAz-Ex.timings
| name | user | system | elapsed | |
| avnotebooks-methods | 0.005 | 0.000 | 0.005 | |
| avtable-methods | 0.001 | 0.000 | 0.000 | |
| avworkflow-methods | 0.003 | 0.001 | 0.004 | |
| az-utilities | 0 | 0 | 0 | |
| az_copy-helpers | 0 | 0 | 0 | |
| az_sas_token | 0.000 | 0.000 | 0.001 | |
| azure-class | 0.002 | 0.000 | 0.002 | |
| azure-methods | 0.001 | 0.000 | 0.000 | |
| has_avworkspace-methods | 0.004 | 0.000 | 0.004 | |
| workspace-dev-ops | 0.001 | 0.000 | 0.001 | |
| workspace-env | 0 | 0 | 0 | |