################################################################################################################################################################## Running command:###### rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ACME_2.66.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ACME.buildbin-libdir###############################################################################################################################################################>>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ACME.buildbin-libdir ACME_2.66.0.tar.gz'>>>>>>> * installing *source* package ‘ACME’ ...** this is package ‘ACME’ version ‘2.66.0’** using staged installation** libsusing C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’using SDK: ‘MacOSX11.3.1.sdk’clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c windowChisq.c -o windowChisq.owindowChisq.c:57:71: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses] while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) & ^windowChisq.c:57:71: note: place parentheses around the '>' expression to silence this warning while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) & ^windowChisq.c:57:71: note: place parentheses around the & expression to evaluate it first while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) & ^ (windowChisq.c:62:70: warning: & has lower precedence than <; < will be evaluated first [-Wparentheses] while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) & ^windowChisq.c:62:70: note: place parentheses around the '<' expression to silence this warning while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) & ^windowChisq.c:62:70: note: place parentheses around the & expression to evaluate it first while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) & ^ (windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable] double *xa,*xlocations,*xchivals; ^windowChisq.c:86:20: warning: incompatible function pointer types initializing 'DL_FUNC' (aka 'void *(*)(void)') with an expression of type 'SEXP (*)(SEXP, SEXP, SEXP, SEXP, SEXP)' (aka 'struct SEXPREC *(*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)') [-Wincompatible-function-pointer-types] {"windowChisq",&windowChisq,5}, ^~~~~~~~~~~~4 warnings generated.clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o ACME.so windowChisq.o -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Users/biocbuild/bbs-3.22-bioc/meat/ACME.buildbin-libdir/00LOCK-ACME/00new/ACME/libs** R** data** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (ACME)>>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR ACME.buildbin-libdir/ACME/libs/ACME.so>>>>>>> >>>>>>> Paths before fix:ACME.buildbin-libdir/ACME/libs/ACME.so:ACME.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)>>>>>>> Fix with install_name_tool:install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libgcc_s.1.1.dylib" "ACME.buildbin-libdir/ACME/libs/ACME.so"install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libgfortran.5.dylib" "ACME.buildbin-libdir/ACME/libs/ACME.so"install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libquadmath.0.dylib" "ACME.buildbin-libdir/ACME/libs/ACME.so">>>>>>> Paths after fix:ACME.buildbin-libdir/ACME/libs/ACME.so:ACME.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)