Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/R/R/bin/R CMD check --install=check:ABarray.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings ABarray_1.78.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/ABarray.Rcheck’* using R version 4.5.0 (2025-04-11)* using platform: aarch64-unknown-linux-gnu* R was compiled by    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0    GNU Fortran (GCC) 14.2.0* running under: openEuler 24.03 (LTS)* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘ABarray/DESCRIPTION’ ... OK* this is package ‘ABarray’ version ‘1.78.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘ABarray’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... NOTEMalformed Title field: should not end in a period.* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking whether startup messages can be suppressed ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTEABarray: warning in read.table(dataFile, header = TRUE, sep = sep, nrow  = 5000, colClasses = colRead): partial argument match of 'nrow' to  'nrows'ABarray: warning in read.table(dataFile, header = TRUE, sep = sep, nrow  = 36000, colClasses = colRead, as.is = TRUE, check.names = FALSE,  comment.char = "", na.string = c("NA", "MultipleValues", "Multiple  Values")): partial argument match of 'na.string' to 'na.strings'ABarray: warning in read.table(dataFile, header = TRUE, sep = sep, nrow  = 36000, colClasses = colRead, as.is = TRUE, check.names = FALSE,  comment.char = "", na.string = c("NA", "MultipleValues", "Multiple  Values")): partial argument match of 'nrow' to 'nrows'ABarray: warning in read.table(dataFile, header = TRUE, sep = sep, nrow  = 36000, colClasses = colRead, check.names = FALSE, comment.char =  "", na.string = c("NA", "MultipleValues", "Multiple Values")):  partial argument match of 'na.string' to 'na.strings'ABarray: warning in read.table(dataFile, header = TRUE, sep = sep, nrow  = 36000, colClasses = colRead, check.names = FALSE, comment.char =  "", na.string = c("NA", "MultipleValues", "Multiple Values")):  partial argument match of 'nrow' to 'nrows'ABarray: warning in dir.create(dataDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'ABarray: warning in dir.create(pdfDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'ABarray: warning in dir.create(jpgDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'doLPE: warning in dir.create(dataDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'doPlotEset: warning in dir.create(dataDir, showWarning = FALSE):  partial argument match of 'showWarning' to 'showWarnings'doPlotEset: warning in dir.create(pdfDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'doPlotEset: warning in dir.create(jpgDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'doPlotFCT: warning in dir.create(dataDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'doPlotFCT: warning in dir.create(pdfDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'doPlotFCT: warning in dir.create(jpgDir, showWarning = FALSE): partial  argument match of 'showWarning' to 'showWarnings'icpPlot: warning in jpeg(file = paste(jpgDir, fname, "_Heatmap.jpg",  sep = ""), width = fWidth, height = fHeight): partial argument match  of 'file' to 'filename'ABarray: no visible binding for global variable ‘colSn’ABarrayGUI : getImputeFunc: no visible binding for global variable  ‘knnRbtn’doLPE: no visible global function definition for ‘baseOlig.error’doLPE: no visible global function definition for ‘lpe’doVennDiagram: no visible global function definition for ‘vennCounts’drawVennDiagram: no visible global function definition for ‘vennCounts’getPantherMap: no visible binding for global variable ‘panther’Undefined global functions or variables:  baseOlig.error colSn knnRbtn lpe panther vennCounts* checking Rd files ... NOTEprepare_Rd: ABarrayGUI.Rd:12-13: Dropping empty section \argumentsprepare_Rd: calcsn.Rd:26-28: Dropping empty section \examplesprepare_Rd: cvv.Rd:22-24: Dropping empty section \examplesprepare_Rd: cvvPlot.Rd:24-26: Dropping empty section \examplesprepare_Rd: doVennDiagram.Rd:33-36: Dropping empty section \examplesprepare_Rd: getMemberEset.Rd:23-25: Dropping empty section \examplesprepare_Rd: getPantherMap.Rd:24-26: Dropping empty section \examplesprepare_Rd: hclusterPlot.Rd:27-29: Dropping empty section \examplesprepare_Rd: matrixPlot.Rd:32-34: Dropping empty section \examplesprepare_Rd: qnNormalize.Rd:52-54: Dropping empty section \examplesprepare_Rd: savejpg.Rd:26-28: Dropping empty section \examplesprepare_Rd: snSummary.Rd:22-25: Dropping empty section \examples* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 3 NOTEsSee  ‘/home/biocbuild/bbs-3.22-bioc/meat/ABarray.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /home/biocbuild/R/R/bin/R CMD INSTALL ABarray###############################################################################################################################################################* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’* installing *source* package ‘ABarray’ ...** this is package ‘ABarray’ version ‘1.78.0’** using staged installation** R** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (ABarray)