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Xanthomonas vesicatoria DSM 22252 is a mesophilic, Gram-negative plant pathogen that was isolated fromLycopersicon esculentum.

1. Gram-negative
2. mesophilic
3. plant pathogen
4. 16S sequence
5. Bacteria
6. genome sequence

• Information on the name and the taxonomic classification. Name and taxonomic classification

Last LPSN update 09-12-2024 (DD-MM-YYYY) Domain Bacteria Phylum Pseudomonadota Class Gammaproteobacteria Order Lysobacterales Family Lysobacteraceae Genus Xanthomonas Species Xanthomonasvesicatoria Full Scientific Name (LPSN) Xanthomonasvesicatoria (ex Doidge 1920) Vauterin et al. 1995

• Information on morphological and physiological properties Morphology

[Ref.: #69480] Gram stain negativeConfidence in %98

• Information on culture and growth conditions Culture and growth conditions

[Ref.: #16234] Culture medium NUTRIENT AGAR (DSMZ Medium 1) [Ref.: #16234] Culture medium growth [Ref.: #16234] Culture medium link Medium recipe at MediaDive [Ref.: #16234] Culture medium composition expand / minimize Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water   [Ref.: #16234] Culture medium R2A MEDIUM (DSMZ Medium 830) [Ref.: #16234] Culture medium growth [Ref.: #16234] Culture medium link Medium recipe provided by DSMZ Temperatures Kind of temperature Temperature [Ref.: #16234] growth 28  °C

• Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481] Ability of spore formation noConfidence in %100

• Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16234] Sample type/isolated from Lycopersicon esculentum [Ref.: #16234] Host species Lycopersicon esculentum [Ref.: #16234] Country New Zealand [Ref.: #16234] Country ISO 3 Code NZL [Ref.: #16234] Continent Australia and Oceania * marker position based on {} Isolation sources categories #Host #Plants #Herbaceous plants (Grass,Crops) What are isolation sources categories? [Ref.: #69479] Global distribution of 16S sequenceY10761 (>99% sequence identity) forXanthomonas fromMicrobeatlas Aquatic Samples 6826 Soil Samples 10026 Animal Samples 28252 Plant Samples 7048 Total Samples 52152

• Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16234] Pathogenicity (plant) yes [Ref.: #16234] Biosafety level 1 Risk group (German classification) According toTRBA 466

• Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information: Sequence accession description Seq. accession number Sequence length (bp) Sequence database Associated NCBI tax ID [Ref.: #16234] X.vesicatoria 16S rRNA gene Y10761 1502 GenBank ENA 925775 tax ID [Ref.: #20218] Xanthomonas vesicatoria clone K0947 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence HM181928 558 GenBank ENA 56460 tax ID * Genome sequence information: Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. Sequence accession description Seq. accession number Assembly level Sequence database Associated NCBI tax ID [Ref.: #66792] Xanthomonas vesicatoria LMG 911 2721755479 complete JGI IMG/M 925775 tax ID * [Ref.: #66792] Xanthomonas vesicatoria ATCC 35937 GCA_000192025 contig GenBank ENA 925775 tax ID * [Ref.: #66792] Xanthomonas vesicatoria ATCC 35937 925775.3 wgs PATRIC 925775 tax ID * [Ref.: #66792] Xanthomonas vesicatoria ATCC 35937 925775.5 complete PATRIC 925775 tax ID * [Ref.: #66792] Xanthomonas vesicatoria ATCC 35937 strain LMG911 925775.6 plasmid PATRIC 925775 tax ID * [Ref.: #66792] Xanthomonas vesicatoria ATCC 35937 strain LMG911 925775.7 plasmid PATRIC 925775 tax ID *

• Data predicted using genome information as a basis Genome-based predictions

Predictions fromGenomeNet Sporulation v. 1 based on: Xanthomonas vesicatoria ATCC 35937 LMG911 NCBI:GCA_001908725.1 Trait Model Prediction Confidence in % In training data [Ref.: #69481] spore-forming spore-formingⓘ no 100 no Predictions fromDiaspora project based on: Xanthomonas vesicatoria ATCC 35937 LMG911 NCBI:GCA_001908725.1 Trait Model Prediction Confidence in % In training data [Ref.: #69480] gram-positive gram-positiveⓘ no 98 no [Ref.: #69480] anaerobic anaerobicⓘ no 98.208 no [Ref.: #69480] aerobic aerobicⓘ yes 85.325 no [Ref.: #69480] spore-forming spore-formingⓘ no 87.383 no [Ref.: #69480] thermophilic thermophileⓘ no 99.981 no [Ref.: #69480] flagellated motile2+ⓘ yes 70.209 no

• Availability in culture collections External links

[Ref.: #16234] Culture collection no. DSM 22252,ATCC 35937,CFBP 2537,ICMP 63,LMG 911,NCPPB 422 [Ref.: #86587] SI-ID 6036 *