A R package that evaluates DNA copy number data, using both their initial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the normal state.
Citing
If you use this package for a publication, we would ask you to cite the following:
Belleau P, Deschênes A, Sun G et al. CNprep: Copy number event detection [version 1; not peer reviewed]. F1000Research 2020, 9:743 (poster) (https://doi.org/10.7490/f1000research.1118065.1)
Authors
Guoli Sun,Pascal Belleau,Astrid Deschênes and Alexander Krasnitz
Installation
To install the latest accessible version, thedevtools package is required.
## To install the development version from GitHubinstall.packages("devtools")devtools::install_github("KrasnitzLab/CNprep")License
This package and the underlyingCNprep code are distributed under the GPL-2. You are free to use and redistribute this software.
For more information on GPL-2 License seehttps://www.gnu.org/licenses/old-licenses/gpl-2.0.txt
Links
- Download from CRAN at
https://cloud.r-project.org/package=CNprep - Browse source code at
https://github.com/KrasnitzLab/CNprep/ - Report a bug at
https://github.com/KrasnitzLab/CNprep/issues
