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evolbioinfo /gotree

Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

tree nexus tree-structure newick phylogeny gotree itol

UpdatedSep 26, 2024
Go

Picani /fastax

Make phylogenetic trees and lineages from the NCBI Taxonomy database

rust sqlite phylogenetic-trees sqlite3 command-line-tool ncbi newick phylogeny bioinformatics-tool ncbi-taxonomy-database

UpdatedMar 19, 2023
Rust

SimonGreenhill /treemaker

A Python library for creating a Newick formatted tree from a set of classification strings

python taxonomy phylogenetics classification newick newick-format

UpdatedOct 14, 2024
Python

fmichonneau /rncl

An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data

r nexus phylogenetics newick tree-parsing

UpdatedJan 5, 2023
C++

simonpenel /light_phylogeny

Light phylogeny API for Rust

svg rust phylogenetic-trees phylogenetics newick phylogeny phyloxml recphyloxml horizontal-transfer reconciled-tree

UpdatedFeb 28, 2025
Rust

lindenb /newicktools

Misc tools for newick format

converts c-plus-plus bioinformatics bison xml newick converts-newick newick-format

UpdatedMar 3, 2017
Yacc

zxjsdp /NodeFinder

Tools for node related operations in phylogenetic analyses.

python bioinformatics phylogenetics newick nodefinder

UpdatedMay 9, 2016
Python

zxjsdp /NodeFinderGUI

GUI for NodeFinder Program

python gui bioinformatics phylogenetics newick nodefinder

UpdatedSep 27, 2016
Python

vibbits /phylio

Read, write, and manipulate phylogenetic trees

typescript purescript nexus phylogenetic-trees newick nexml phyloxml nhx

UpdatedApr 21, 2025
PureScript

leonardomathon /hierarchical-data-visualization-tool

This is our visualization project which was build for 2IOA0 DBL HTI + Webtech course (2017-2018) at the TU/Eindhoven.

visualization hierarchical-data newick newick-format

UpdatedJul 5, 2018
Tcl

tomasmcoronado /prob-alpha

Computation of the probabilities under Ford's alpha model of spanning binary trees and shape using Sage's Python.

python phylogenetic-trees trees python-modules newick probabilities ford-alpha-model

UpdatedJun 20, 2017
Python

SplitP

js51 /SplitP

Python package that implements split- and rank-based tools for inferring phylogenies, such as flattenings and subflattenings.

python parser biology linear-algebra split rank phylogenetics networks trees newick newick-format utas splitp flattenings subflattenings mathbio

UpdatedFeb 21, 2024
Python

SandraKla /NewickReader

Package for reading the Newick format

r packages newick newick-format

UpdatedFeb 15, 2023
R

zxjsdp /NodeFinderC

C implementation of NodeFinder program

c bioinformatics phylogenetics newick nodefinder

UpdatedDec 27, 2021
C

genpat-it /dist2mst

High-performance tool for constructing Minimum Spanning Trees from symmetric distance matrices. Features Numba-accelerated algorithms, parallel processing, and zero-distance grouping. Outputs MST in standard Newick format.

bioinformatics newick minimum-spanning-trees distance-matrix

UpdatedMar 31, 2025
Python

bioinfweb /JPhyloIO

A Java library for event-based reading and writing of different phylogenetic file formats through a common interface

metadata library bioinformatics nexus phylogenetics io bioinformatics-data newick phylogenetic-data nexml phyloxml

UpdatedSep 8, 2020
Java

zxjsdp /nodefinder-go

Go implementation of NodeFinder program.

go golang bioinformatics phylogenetics newick nodefinder

UpdatedSep 19, 2017
Go

qurben /libnewicktree

A standalone Newick tree reader in Java

java bioinformatics newick

UpdatedMay 21, 2015
Java

ArnoutLuinge /html-newick-tree-viewer

UpdatedMay 4, 2020
JavaScript

Stepainpy /newick-converter

simple converter

converter terminal cpp simple terminal-app newick newick-format

UpdatedNov 9, 2023
C++

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