🏥 Medical Text Mining and Information Extraction with spaCy

• UpdatedNov 1, 2022
• Python

Code and pretrained model for paper "Learning to Summarize Radiology Findings"

• UpdatedFeb 26, 2019
• Python

Challenge on Textual Inference and Question Entailment in the Medical Domainhttps://sites.google.com/view/mediqa2019

• UpdatedJan 27, 2023
• Python

Medical Question-Answering datasets prepared for the TREC 2017 LiveQA challenge (Medical Task)

• UpdatedNov 28, 2024

HEAD-QA: A Healthcare Dataset for Complex Reasoning

• UpdatedFeb 15, 2021
• Python

🏥 Clinical NER with UMLS lookup 🏥

• UpdatedMar 20, 2020
• Jupyter Notebook

The medical question entailment data introduced in the AMIA 2016 Paper (Recognizing Question Entailment for Medical Question Answering)

• UpdatedJan 27, 2023

Generate Medical Summary/Clinical notes using GPT-2

• UpdatedAug 17, 2020
• Jupyter Notebook

Medical natural language parsing and utility library

• UpdatedApr 13, 2025
• Python

Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recognition and linking methods such MedCAT.

• UpdatedJan 20, 2023
• Jupyter Notebook

Codebase for "Learning to ground medical text in a 3D human atlas (CoNLL 2020)".

• UpdatedNov 19, 2020
• Python

AskDocs: A medical QA dataset

• UpdatedJun 29, 2022
• Jupyter Notebook

Negation detection in Dutch clinical text.

• UpdatedMar 5, 2024
• Jupyter Notebook

• UpdatedJan 8, 2021
• Python

Guide to download and extract Dutch medical wikipedia articles.

• UpdatedJul 6, 2022
• Shell

In this we finetuned the Gemini model with our own medical NER dataset and used to recognize Name Entities

• UpdatedJan 7, 2025
• Jupyter Notebook

의료 분야 자연어처리 관련 논문 리뷰

• UpdatedMay 16, 2022

The repository for the SEVA PhysionNet publication "Semi-supervised Extraction, Validation and model-based Analysis of Medical Sections in MIMIC-III Patient Notes"

• UpdatedMay 26, 2022
• Python

Mammo Lingua is a GUI application for Name Entity Recognition (NER) and BIRADS Classification. The application is built using Python with PyQt5 for the GUI and SpaCy for NER. The goal is to provide a tool that can analyze medical texts, identify named entities, and classify BIRADS categories.

• UpdatedMay 14, 2025
• Python

Medical NLP Competition, dataset, large models, paper

• UpdatedDec 6, 2024