Nanopore demultiplexing, QC and alignment pipeline

• UpdatedApr 30, 2025
• Nextflow

Lima - Demultiplex Barcoded PacBio Samples

• UpdatedApr 28, 2025
• R

Single cell Nanopore sequencing data for Genotype and Phenotype

• UpdatedApr 24, 2025
• Python

Parse Illumina sample sheets with Python

• UpdatedMar 20, 2024
• Python

Demultiplexing pipeline for sequencing data

• UpdatedApr 30, 2025
• Nextflow

Maximum likelihood demultiplexing

• UpdatedFeb 14, 2025
• C++

Please switch tohttps://github.com/OpenGene/defastq

• UpdatedJul 28, 2018
• C

Fast and accurate sequence demultiplexing

• UpdatedFeb 12, 2025
• C++

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

• UpdatedOct 4, 2023
• Python

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

• UpdatedAug 17, 2024
• Python

Comprehensive pipeline for donor demultiplexing in single cell

• UpdatedJun 4, 2024
• Nextflow

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

• UpdatedOct 19, 2023
• Python

🍸 Web-based database system for flow cell management (incl. REST API)

• UpdatedMar 7, 2024
• Python

deMULTIplex2: robust sample demultiplexing for scRNA-seq

• UpdatedFeb 23, 2025
• R

fast, reliable and handy demultiplexing tool for fastx files

• UpdatedApr 22, 2025
• Rust

Super-fast and accurate demultiplexing of direct RNA-seq runs.

• UpdatedFeb 23, 2025
• Jupyter Notebook

mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

• UpdatedApr 28, 2025
• Rust

Simple management of Illumina sequencing flowcells

• UpdatedOct 23, 2018
• Python

High-performance Julia tool for sequence demultiplexing

• UpdatedApr 30, 2025
• Julia

snakemake workflow for basecalling and demultiplexing of ONT sequencing data

• UpdatedApr 4, 2023
• Python