Explainable Machine Learning in Survival Analysis

• UpdatedJun 15, 2024
• R

Python/R library for feature selection in neural nets. ("Feature selection using Stochastic Gates", ICML 2020)

• UpdatedFeb 18, 2022
• Python

COX Proportional risk model and survival analysis implemented by tensorflow.

• UpdatedMar 5, 2021
• Python

SurvSHAP(t): Time-dependent explanations of machine learning survival models

• UpdatedJan 4, 2024
• Jupyter Notebook

By-hand code for models and algorithms. An update to the 'Miscellaneous-R-Code' repo.

• UpdatedJan 28, 2021
• R

Code for the paper "Deep Cox Mixtures for Survival Regression", Machine Learning for Healthcare Conference 2021

• UpdatedNov 26, 2022

Easily Process a Batch of Cox Models

• UpdatedJan 5, 2024
• R

Integrative Survival Models

• UpdatedApr 3, 2021
• C++

Dynamic Models for Survival Data

• UpdatedJul 8, 2024
• C++

Survival Analysis of Lung Cancer Patients

• UpdatedApr 1, 2025
• Jupyter Notebook

Survival analysis functions that allow left truncation and weighting, including Aalen-Johansen, Kaplan-Meier, and Cox proportional hazards regression

• UpdatedJan 8, 2025
• Julia

Solution that I provided to the 2020 challenge organized by Collège de France and Ecole Normale Supérieure of Paris. I finished 2nd out of the 98 teams/participants that participated.

• UpdatedMar 1, 2021
• Jupyter Notebook

Survival modelling using Cox proportional hazard regression model

• UpdatedMar 31, 2017
• R

Multiresponse time-to-event Cox proportional hazards model - CPU

• UpdatedFeb 9, 2021
• R

Survival functions (client side) for DataSHIELD. Package for building survival models, Cox proportional hazards models and Cox regression models in DataSHIELD.

• UpdatedJul 3, 2023
• HTML

Interaction-Partitioned Topic Models (IPTM) using a Point Process Approach

• UpdatedJul 20, 2018
• TeX

Code and supplementary materials for the manuscript "Multiple imputation for cause-specific Cox models: assessing methods for estimation and prediction" (2022, Statistical Methods in Medical Research)

• UpdatedJun 8, 2022
• R

Smooth Hazard Ratio Curves Taking a Reference Value

• UpdatedFeb 25, 2024
• R

Code and supplementary materials for the manuscript "Handling missing covariate data in clinical studies in haematology" (2023, Best Practice & Research Clinical Haematology)

• UpdatedMay 29, 2023
• R

simulated data and estimation code for replication purposes for the paper MKSC-20-0420

• UpdatedMar 18, 2022
• MATLAB