bioprocess
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The Biorefinery Simulation and Techno-Economic Analysis Modules; Life Cycle Assessment; Chemical Process Simulation Under Uncertainty
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Apr 18, 2025 - Python
Deep hybrid modeling of bioreactor cell culture data using Long Short-Term Memory (LSTM) networks combined with first principles equations
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Mar 21, 2024 - MATLAB
Python package for processing of DASware raw data exports.
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Mar 17, 2025 - Jupyter Notebook
sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems
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Oct 11, 2024 - Python
Material for standard text book model of fedbatch cultivation.
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Mar 26, 2025 - Jupyter Notebook
Code behind 'Data Driven Modelling and Optimisation for Sustainable Bio-Production' as well as a related simple kinetic model using odes
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May 28, 2020 - Jupyter Notebook
Material for standard text book model of perfusion cultivation.
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Mar 31, 2025 - Jupyter Notebook
Material for standard text book model of batch cultivation where substrate measurement noise added and end of batch detected
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Mar 29, 2025 - Jupyter Notebook
Material for model of fedbatch cultivation of CHO cells.
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Mar 27, 2025 - Jupyter Notebook
Material for model of aerated fedbatch cultivation of yeast.
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Mar 26, 2025 - Jupyter Notebook
Material for standard text book model of batch cultivation where model is calibrated using time series data for substrate and cell concentration.
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Mar 26, 2025 - Jupyter Notebook
Material for standard text book model of batch cultivation.
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Mar 31, 2025 - Jupyter Notebook
Material for model of batch cultivation of yeast and exploring constraint-based view of metabolism and growth.
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Mar 26, 2025 - Jupyter Notebook
R Scripts for quantification of microbial robustness from high-throughput screenings
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Apr 5, 2023
Material for standard text book model of chemostat (continuous) cultivation.
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Mar 31, 2025 - Jupyter Notebook
Documentation
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Feb 19, 2025 - Python
Notebooks with examples to be presented at Modelica 15 in October 2023
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Mar 27, 2025 - Jupyter Notebook
Clonalyzer is a Python-based tool designed to clean, process, and analyze kinetic data from CHO (Chinese Hamster Ovary) cell clones. It supports experiments involving multiple clones and replicates, enabling users to evaluate performance across various experimental conditions systematically.
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Dec 12, 2024 - Jupyter Notebook
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