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#

bioprocess

Here are 22 public repositories matching this topic...

biosteam

Mechanistic models in fermentation

  • UpdatedAug 30, 2022
  • Python

Deep hybrid modeling of bioreactor cell culture data using Long Short-Term Memory (LSTM) networks combined with first principles equations

  • UpdatedMar 21, 2024
  • MATLAB

Python package for processing of DASware raw data exports.

  • UpdatedMar 17, 2025
  • Jupyter Notebook

sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems

  • UpdatedOct 11, 2024
  • Python

Material for standard text book model of fedbatch cultivation.

  • UpdatedMar 26, 2025
  • Jupyter Notebook

Code behind 'Data Driven Modelling and Optimisation for Sustainable Bio-Production' as well as a related simple kinetic model using odes

  • UpdatedMay 28, 2020
  • Jupyter Notebook

Material for standard text book model of perfusion cultivation.

  • UpdatedMar 31, 2025
  • Jupyter Notebook

Material for standard text book model of batch cultivation where substrate measurement noise added and end of batch detected

  • UpdatedMar 29, 2025
  • Jupyter Notebook

Material for model of fedbatch cultivation of CHO cells.

  • UpdatedMar 27, 2025
  • Jupyter Notebook

Material for model of aerated fedbatch cultivation of yeast.

  • UpdatedMar 26, 2025
  • Jupyter Notebook

Material for standard text book model of batch cultivation where model is calibrated using time series data for substrate and cell concentration.

  • UpdatedMar 26, 2025
  • Jupyter Notebook

Material for standard text book model of batch cultivation.

  • UpdatedMar 31, 2025
  • Jupyter Notebook

A Fed-Batch Solver

  • UpdatedApr 5, 2025
  • MATLAB

Material for model of batch cultivation of yeast and exploring constraint-based view of metabolism and growth.

  • UpdatedMar 26, 2025
  • Jupyter Notebook

R Scripts for quantification of microbial robustness from high-throughput screenings

  • UpdatedApr 5, 2023

Material for standard text book model of chemostat (continuous) cultivation.

  • UpdatedMar 31, 2025
  • Jupyter Notebook

Notebooks with examples to be presented at Modelica 15 in October 2023

  • UpdatedMar 27, 2025
  • Jupyter Notebook

Clonalyzer is a Python-based tool designed to clean, process, and analyze kinetic data from CHO (Chinese Hamster Ovary) cell clones. It supports experiments involving multiple clones and replicates, enabling users to evaluate performance across various experimental conditions systematically.

  • UpdatedDec 12, 2024
  • Jupyter Notebook

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