Pull requests: microbiomedata/nmdc-runtime

16 Open 422 Closed

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Pull requests list

Automatically allocate unassigned host ports todev+test stack services; Useentrypoint to yield port values to codebase

#988 openedMay 13, 2025 bydwinston • Draft

17 tasks

1

Add a job that pulls ininsdc_biosample_identifiers andinsdc_bioproject_identifiers onto biosamples

#980 openedMay 6, 2025 bysujaypatil96Loading…

7 of 17 tasks

1

Enable certain graph-traversal queries (viaalldocs)

#972 openedApr 29, 2025 bydwinstonLoading…

6 of 10 tasks

1

16

Update NCBI XML export pipeline to account for pooled NMDC biosamples

#950 openedApr 15, 2025 bysujaypatil96Loading…

2 of 17 tasks

1

Ontology loader

#923 openedMar 5, 2025 bysierra-moxonLoading…

1

Update schema references to point tonmdc_materialized_patterns variant

#887 openedJan 30, 2025 byeecavannaLoading…

8 of 17 tasks

1

6

[DRAFT - Needs more feedback] Add support for user specified token lifetimes

#829 openedDec 10, 2024 byshreddd • Draft

3 of 17 tasks

1

Replace custom build system with Poetry

#792 openedNov 23, 2024 byeecavanna • Draft

8 of 16 tasks

1

7

add referential integrity checking to API operations

#644 openedAug 20, 2024 bydwinston • Draft

3 of 9 tasks

1

4

Add Dagster job to create rollup JSON/collection

#643 openedAug 16, 2024 bysujaypatil96Loading…

4 of 10 tasks

1

9

Updateget_data notebook in runtime documentation to use napa style identifiers

#598 openedJul 17, 2024 byPeopleMakeCultureLoading…

1 of 7 tasks

1

6

/queries:run write errors yield a more informative error code and message

#541 openedMay 30, 2024 bydwinston • Draft

2 of 9 tasks

1

Update testing workflow name to pytest

#527 openedMay 17, 2024 byPeopleMakeCultureLoading…

1 task

1

[WIP DO NOT MERGE] add fair-test.yml and fair-test-test.py

#501 openedApr 2, 2024 byPeopleMakeCulture • Draft

12 tasks

Initial data portal endpoints

#324 openedOct 11, 2023 byjeffbaumes • Draft

2

Document database migration procedure

#306 openedSep 19, 2023 byeecavanna • Draft

1