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🐟 A Swiss-Army Knife for Data I/O
gesistsa/rio
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The aim ofrio is to make data file I/O in R as easy as possible byimplementing two main functions in Swiss-army knife style:
import()
provides a painless data import experience byautomatically choosing the appropriate import/read function based onfile extension (or a specifiedformat
argument)export()
provides the same painless file recognition for dataexport/write functionality
The package is available onCRAN and can be installeddirectly in R usinginstall.packages()
.
install.packages("rio")
The latest development version on GitHub can be installed using:
if (!require("remotes")){ install.packages("remotes")}remotes::install_github("gesistsa/rio")
Optional: Installation of additional formats (see below:Supportedfile formats)
library(rio)install_formats()
Becauserio is meant to streamline data I/O, the package isextremely easy to use. Here are some examples of reading, writing, andconverting data files.
Importing data is handled with one function,import()
:
library("rio")import("starwars.xlsx")
## Name homeworld species## 1 Luke Skywalker Tatooine Human## 2 C-3PO Tatooine Human## 3 R2-D2 Alderaan Human## 4 Darth Vader Tatooine Human## 5 Leia Organa Tatooine Human## 6 Owen Lars Tatooine Human## 7 Beru Whitesun lars Stewjon Human## 8 R5-D4 Tatooine Human## 9 Biggs Darklighter Kashyyyk Wookiee## 10 Obi-Wan Kenobi Corellia Human
import("starwars.csv")
## Name homeworld species## 1 Luke Skywalker Tatooine Human## 2 C-3PO Tatooine Human## 3 R2-D2 Alderaan Human## 4 Darth Vader Tatooine Human## 5 Leia Organa Tatooine Human## 6 Owen Lars Tatooine Human## 7 Beru Whitesun lars Stewjon Human## 8 R5-D4 Tatooine Human## 9 Biggs Darklighter Kashyyyk Wookiee## 10 Obi-Wan Kenobi Corellia Human
Exporting data is handled with one function,export()
:
export(mtcars,"mtcars.csv")# comma-separated valuesexport(mtcars,"mtcars.rds")# R serializedexport(mtcars,"mtcars.sav")# SPSS
A particularly useful feature of rio is the ability to import from andexport to compressed archives (e.g., zip), saving users the extra stepof compressing a large exported file, e.g.:
export(mtcars,"mtcars.tsv.zip")
export()
can also write multiple data frames to respective sheets ofan Excel workbook or an HTML file:
export(list(mtcars=mtcars,iris=iris),file="mtcars.xlsx")
rio supports a wide range of file formats. To keep the package slim,several formats are supported via “Suggests” packages, which are notinstalled (or loaded) by default. You can check which formats arenot supported via:
show_unsupported_formats()
You can install the suggested packages individually, depending your ownneeds. If you want to install all suggested packages:
install_formats()
The full list of supported formats is below:
Name | Extensions / “format” | Import Package | Export Package | Type | Note |
---|---|---|---|---|---|
Archive files (handled by tar) | tar / tar.gz / tgz / tar.bz2 / tbz2 | utils | utils | Default | |
Bzip2 | bz2 / bzip2 | base | base | Default | |
Gzip | gz / gzip | base | base | Default | |
Zip files | zip | utils | utils | Default | |
Ambiguous file format | dat | data.table | Default | Attempt as delimited text data | |
CSVY (CSV + YAML metadata header) | csvy | data.table | data.table | Default | |
Comma-separated data | csv | data.table | data.table | Default | |
Comma-separated data (European) | csv2 | data.table | data.table | Default | |
Data Interchange Format | dif | utils | Default | ||
Epiinfo | epiinfo / rec | foreign | Default | ||
Excel | excel / xlsx | readxl | writexl | Default | |
Excel (Legacy) | xls | readxl | Default | ||
Fixed-width format data | fwf | readr | utils | Default | |
Fortran data | fortran | utils | Default | No recognized extension | |
Google Sheets | googlesheets | data.table | Default | As comma-separated data | |
Minitab | minitab / mtp | foreign | Default | ||
Pipe-separated data | psv | data.table | data.table | Default | |
R syntax | r | base | base | Default | |
SAS | sas / sas7bdat | haven | haven | Default | Export is deprecated |
SAS XPORT | xport / xpt | haven | haven | Default | |
SPSS | sav / spss | haven | haven | Default | |
SPSS (compressed) | zsav | haven | haven | Default | |
SPSS Portable | por | haven | Default | ||
Saved R objects | rda / rdata | base | base | Default | |
Serialized R objects | rds | base | base | Default | |
Stata | dta / stata | haven | haven | Default | |
Systat | syd / systat | foreign | Default | ||
Tab-separated data | / tsv / txt | data.table | data.table | Default | |
Text Representations of R Objects | dump | base | base | Default | |
Weka Attribute-Relation File Format | arff / weka | foreign | foreign | Default | |
XBASE database files | dbf | foreign | foreign | Default | |
Apache Arrow (Parquet) | parquet | nanoparquet | nanoparquet | Suggest | |
Clipboard | clipboard | clipr | clipr | Suggest | default is tsv |
EViews | eviews / wf1 | hexView | Suggest | ||
Fast Storage | fst | fst | fst | Suggest | |
Feather R/Python interchange format | feather | arrow | arrow | Suggest | |
Graphpad Prism | pzfx | pzfx | pzfx | Suggest | |
HTML Tables | htm / html | xml2 | xml2 | Suggest | |
JSON | json | jsonlite | jsonlite | Suggest | |
Matlab | mat / matlab | rmatio | rmatio | Suggest | |
OpenDocument Spreadsheet | ods | readODS | readODS | Suggest | |
OpenDocument Spreadsheet (Flat) | fods | readODS | readODS | Suggest | |
Serialized R objects (Quick) | qs | qs | qs | Suggest | |
Shallow XML documents | xml | xml2 | xml2 | Suggest | |
YAML | yaml / yml | yaml | yaml | Suggest |
Additionally, any format that is not supported byrio but that has aknown R implementation will produce an informative error messagepointing to a package and import or export function. Unrecognizedformats will yield a simple “Unrecognized file format” error.
Theconvert()
function linksimport()
andexport()
by constructinga dataframe from the imported file and immediately writing it back todisk.convert()
invisibly returns the file name of the exported file,so that it can be used to programmatically access the new file.
convert("mtcars.sav","mtcars.dta")
It is also possible to userio on the command-line by callingRscript
with the-e
(expression) argument. For example, to convert afile from Stata (.dta) to comma-separated values (.csv), simply do thefollowing:
Rscript -e "rio::convert('iris.dta', 'iris.csv')"
import_list()
allows users to import a list of data frames from amulti-object file (such as an Excel workbook, .Rdata file, zipdirectory, or HTML file):
str(m<- import_list("mtcars.xlsx"))
## List of 2## $ mtcars:'data.frame': 32 obs. of 11 variables:## ..$ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ...## ..$ cyl : num [1:32] 6 6 4 6 8 6 8 4 4 6 ...## ..$ disp: num [1:32] 160 160 108 258 360 ...## ..$ hp : num [1:32] 110 110 93 110 175 105 245 62 95 123 ...## ..$ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ...## ..$ wt : num [1:32] 2.62 2.88 2.32 3.21 3.44 ...## ..$ qsec: num [1:32] 16.5 17 18.6 19.4 17 ...## ..$ vs : num [1:32] 0 0 1 1 0 1 0 1 1 1 ...## ..$ am : num [1:32] 1 1 1 0 0 0 0 0 0 0 ...## ..$ gear: num [1:32] 4 4 4 3 3 3 3 4 4 4 ...## ..$ carb: num [1:32] 4 4 1 1 2 1 4 2 2 4 ...## $ iris :'data.frame': 150 obs. of 5 variables:## ..$ Sepal.Length: num [1:150] 5.1 4.9 4.7 4.6 5 5.4 4.6 5 4.4 4.9 ...## ..$ Sepal.Width : num [1:150] 3.5 3 3.2 3.1 3.6 3.9 3.4 3.4 2.9 3.1 ...## ..$ Petal.Length: num [1:150] 1.4 1.4 1.3 1.5 1.4 1.7 1.4 1.5 1.4 1.5 ...## ..$ Petal.Width : num [1:150] 0.2 0.2 0.2 0.2 0.2 0.4 0.3 0.2 0.2 0.1 ...## ..$ Species : chr [1:150] "setosa" "setosa" "setosa" "setosa" ...
export_list()
makes it easy to export a list of (possibly named) dataframes to multiple files:
export_list(m,"%s.tsv")c("mtcars.tsv","iris.tsv")%in% dir()
## [1] TRUE TRUE
- datamods providesShiny modules for importing data via
rio
. - rioweb that providesaccess to the file conversion features of
rio
. - GREA is an RStudio add-inthat provides an interactive interface for reading in data using
rio
.
- reader handlescertain text formats and R binary files
- io offers a set ofcustom formats
- ImportExportfocuses on select binary formats (Excel, SPSS, and Access files) andprovides a Shiny interface.
- SchemaOnReaditerates through a large number of possible import methods until oneworks successfully
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🐟 A Swiss-Army Knife for Data I/O