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1. PCAonePCAonePublic

   Fast, Accurate and Memory-Efficient Principal Component Analysis For Tera-scale Dataset

   C++ 48 4

2. rwdavies/QUILTrwdavies/QUILTPublic

   QUILT: Low coverage whole genome sequence imputation with large reference panels

   R 64 10

3. PCAoneRPCAoneRPublic

   Window based randomized singular value decomposition (winSVD)

   R 5 1

4. vcfppRvcfppRPublic

   The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049

   C 15 4

5. SVUPPSVUPPPublic

   genotype Structural Variants Using Pre-Phased Reads

   Nextflow 1

6. phaselessphaselessPublic

   Imputation and Admixture for lcWGS in one goal

   C++ 2