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Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
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Marsilea-viz/marsilea
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You can read the documentation on Read the Docs.
pip install marsilea
conda install -c conda-forge marsilea# ormamba install -c conda-forge marsilea
When we do visualization, we often need to combine multiple plots to show different aspects of the data.For example, we may need to create a heatmap to show the expression of genes in different cells,and then create a bar chart to show the expression of genes in different cell types.A visualization contains multiple plots is called a composable visualization.In Marsilea, we employ a declarative approach for user to create composable visualization incrementally.
If you use Marsilea in your research, please cite the following:
Marsilea: an intuitive generalized paradigm for composable visualizations
Yimin Zheng, Zhihang Zheng, André F. Rendeiro & Edwin Cheung
Genome Biology 2025 Jan 06. DOI:10.1186/s13059-017-1382-0
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Bar Chart With Image | Stacked Bar | Arc Diagram |
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Heatmap | Oncoprint | Upsetplot |
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Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
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