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Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

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Marsilea-viz/marsilea

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Shows a bar chart with benchmark results.

Documentation Statuspypi versionConda VersionPyPI - LicenseDOI

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Marsilea: Declarative creation of composable visualization!


Documentation

You can read the documentation on Read the Docs.

Read Documentation

Installation

Using PIP

pip install marsilea

Using Conda/Mamba

conda install -c conda-forge marsilea# ormamba install -c conda-forge marsilea

What is Composable Visualization?

Shows a bar chart with benchmark results.

When we do visualization, we often need to combine multiple plots to show different aspects of the data.For example, we may need to create a heatmap to show the expression of genes in different cells,and then create a bar chart to show the expression of genes in different cell types.A visualization contains multiple plots is called a composable visualization.In Marsilea, we employ a declarative approach for user to create composable visualization incrementally.

Citation

If you use Marsilea in your research, please cite the following:

Marsilea: an intuitive generalized paradigm for composable visualizations

Yimin Zheng, Zhihang Zheng, André F. Rendeiro & Edwin Cheung

Genome Biology 2025 Jan 06. DOI:10.1186/s13059-017-1382-0

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  1. Open an issue
  2. Join us onGitter

Examples

Bar Chart With Image Stacked Bar Arc Diagram
Heatmap Oncoprint Upsetplot

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Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

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