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Subclade

From Wikipedia, the free encyclopedia
For other uses, seeSubclade (disambiguation).
Part ofa series on
Genetic genealogy
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See also:Cladistics

Ingenetics, asubclade is a subgroup of ahaplogroup.[1]

Naming convention

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Althoughhuman mitochondrial DNA (mtDNA) andY chromosome DNA (Y-DNA) haplogroups and subclades are named in a similar manner, their names belong to completely separate systems.[2]

mtDNA

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mtDNA haplogroups are defined by the presence of a series ofsingle-nucleotide polymorphism (SNP)markers in thehypervariable regions and thecoding region ofmitochondrial DNA. They are named with the capital letters A through Z, with further subclades named using numbers and lower case letters.[2][3][4]

Y-DNA

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Y-DNA haplogroups are defined by the presence of a series of SNP markers on theY chromosome. Subclades are defined by aterminal SNP, the SNP furthest down in the Y chromosome phylogenetic tree.[5]

Human Y-DNA

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TheY Chromosome Consortium (YCC) developed a system of naming major human Y-DNA haplogroups with the capital letters A through T, with further subclades named using numbers and lower case letters (YCC longhandnomenclature). YCC shorthand nomenclature names Y-DNA haplogroups and their subclades with the first letter of the major Y-DNA haplogroup followed by a dash and the name of the defining terminal SNP.[6] Y-DNA haplogroup nomenclature is changing over time to accommodate the increasing number of SNPs being discovered and tested, and the resulting expansion of the Y chromosome phylogenetic tree. This change in nomenclature has resulted in inconsistent nomenclature being used in different sources.[7] This inconsistency, and increasingly cumbersome longhand nomenclature, has prompted a move towards using the simpler shorthand nomenclature.

See also

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References

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  1. ^Caselli, Giovanni (21 July 2022).Etruria and the Origins of the Etruscans. Cambridge Scholars Publishing. p. 33.ISBN 978-1-5275-8475-4.
  2. ^ab"Understanding Results: mtDNA: How are mitochondrial DNA (mtDNA) Haplogroups named?". Family Tree DNA. Retrieved3 April 2013.
  3. ^"About mtDNA Haplogroups (Maternal Ancient Ancestry)". DNA Ancestry Project. Archived fromthe original on April 14, 2013. Retrieved1 April 2013.
  4. ^"Comparison of Y-DNA and mtDNA haplogroups". DNA Ancestry Project. Archived fromthe original on April 14, 2013. Retrieved1 April 2013.
  5. ^"myFTDNA 2.0 User Guide: Y-DNA: What is the Y-DNA - Matches page?". Family Tree DNA. Retrieved31 March 2013.A terminal SNP determines the terminal (final) subbranch on the Y-DNA Tree to which someone belongs.
  6. ^"Understanding Results: Y-DNA Single Nucleotide Polymorphism (SNP): How are haplogroups and their subclades named?". Family Tree DNA. Retrieved31 March 2013.
  7. ^"Understanding Haplogroups: How are the haplogroups named?". Family Tree DNA. Archived fromthe original on 21 June 2012. Retrieved31 March 2013.
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