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Holophagae

From Wikipedia, the free encyclopedia
Class of bacteria

Holophagae
Scientific classificationEdit this classification
Domain:Bacteria
Kingdom:Pseudomonadati
Phylum:Acidobacteriota
Class:Holophagae
Fukunaga et al. 2008[1]
Type genus
Holophaga
Liesack et al. 1995
Orders[2]
Synonyms
  • "Holophagia"Oren, Parte & Garrity 2016

Holophagae is a class ofAcidobacteriota.[1]

Phylogeny

[edit]

The currently accepted taxonomy is based on theList of Prokaryotic names with Standing in Nomenclature[2] and theNational Center for Biotechnology Information (NCBI).[3] Numbered orders do not yet have any cultured representatives.

16S rRNA based phylogeny[4]16S rRNA basedLTP_10_2024[5][6][7]120 marker proteins basedGTDB 09-RS220[8][9][10]

See also

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References

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  1. ^abFukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008)."Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description ofAcanthopleuribacteraceae fam. nov.,Acanthopleuribacterales ord. nov.,Holophagaceae fam. nov.,Holophagales ord. nov. andHolophagae classis nov. in the phylum "Acidobacteria"".Int J Syst Evol Microbiol.58 (Pt 11):2597–2601.doi:10.1099/ijs.0.65589-0.PMID 18984699.
  2. ^abEuzéby JP, Parte AC."Holophagae".List of Prokaryotic names with Standing in Nomenclature (LPSN). RetrievedMay 8, 2022.
  3. ^Sayers."Holophagae".National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved2016-03-20.
  4. ^Dedysh SN, Yilmaz P. (2018)."Refining the taxonomic structure of the phylumAcidobacteria".Int J Syst Evol Microbiol.68 (12):3796–3806.doi:10.1099/ijsem.0.003062.PMID 30325293.S2CID 53502177.
  5. ^"The LTP". Retrieved10 December 2024.
  6. ^"LTP_all tree in newick format". Retrieved10 December 2024.
  7. ^"LTP_10_2024 Release Notes"(PDF). Retrieved10 December 2024.
  8. ^"GTDB release 09-RS220".Genome Taxonomy Database. Retrieved10 May 2024.
  9. ^"bac120_r220.sp_labels".Genome Taxonomy Database. Retrieved10 May 2024.
  10. ^"Taxon History".Genome Taxonomy Database. Retrieved10 May 2024.
Prokaryotes:Bacteria classification
Candidate Phyla
Radiation
"Synergistetes"
"Thermocalda"
Cyanoprokaryota
"Firmicutes"
  • Bacillota
  • Bacillota A
    • "Clostridiia"
    • "Thermoanaerobacteria"
    • Thermosediminibacteria
  • Bacillota D
  • Bacillota E
    • Sulfobacillia
    • Symbiobacteriia
    • Thermaerobacteria
  • Bacillota G
    • "Hydrogenisporia"
    • Limnochordia
  • "Desulfotomaculota"
    • "Carboxydocellia"
    • "Carboxydothermia"
    • "Dehalobacteriia"
    • Desulfitobacteriia
    • Desulfotomaculia
    • "Moorellia"
    • Peptococcia
    • Syntrophomonadia
    • Thermincolia
  • "Halanaerobiaeota"
  • "Selenobacteria"
"Sphingobacteria"
"Planctobacteria"
"Proteobacteria"
Incertae sedis
Incertae sedis
GTDB 09-RS220;LTP_10_2024
Holophagae
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