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Farnesoid X receptor

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

NR1H4
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1OSH,3BEJ,3DCT,3DCU,3FLI,3FXV,3GD2,3HC5,3HC6,3L1B,3OKH,3OKI,3OLF,3OMK,3OMM,3OOF,3OOK,3RUT,3RUU,3RVF,3P88,3P89,4OIV,4WVD,4QE6,4QE8

Identifiers
AliasesNR1H4, BAR, FXR, HRR-1, HRR1, RIP14, nuclear receptor subfamily 1 group H member 4, PFIC5
External IDsOMIM:603826;MGI:1352464;HomoloGene:3760;GeneCards:NR1H4;OMA:NR1H4 - orthologs
Gene location (Human)
Chromosome 12 (human)
Chr.Chromosome 12 (human)[1]
Chromosome 12 (human)
Genomic location for NR1H4
Genomic location for NR1H4
Band12q23.1Start100,473,708bp[1]
End100,564,414bp[1]
Gene location (Mouse)
Chromosome 10 (mouse)
Chr.Chromosome 10 (mouse)[2]
Chromosome 10 (mouse)
Genomic location for NR1H4
Genomic location for NR1H4
Band10 C2|10 44.98 cMStart89,290,096bp[2]
End89,369,447bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of liver

  • mucosa of ileum

  • right adrenal gland

  • right adrenal cortex

  • oocyte

  • left adrenal gland

  • left adrenal cortex

  • jejunal mucosa

  • duodenum

  • secondary oocyte
Top expressed in
  • right kidney

  • epithelium of small intestine

  • ileum

  • left lobe of liver

  • human kidney

  • proximal tubule

  • Ileal epithelium

  • Paneth cell

  • jejunum

  • migratory enteric neural crest cell
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

9971

20186

Ensembl

ENSG00000012504

ENSMUSG00000047638

UniProt

Q96RI1

Q60641

RefSeq (mRNA)
NM_001206977
NM_001206978
NM_001206979
NM_001206992
NM_001206993

NM_005123

NM_001163504
NM_001163700
NM_009108
NM_001385711

RefSeq (protein)
NP_001193906
NP_001193907
NP_001193908
NP_001193921
NP_001193922

NP_005114
NP_001193906.1
NP_001193908.1

NP_001156976
NP_001157172
NP_033134
NP_001372640

Location (UCSC)Chr 12: 100.47 – 100.56 MbChr 10: 89.29 – 89.37 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Thebile acid receptor (BAR), also known asfarnesoid X receptor (FXR) orNR1H4 (nuclear receptor subfamily 1, group H, member 4), is anuclear receptor that is encoded by theNR1H4 gene in humans.[5][6]

Function

[edit]

FXR is expressed at high levels in the liver and intestine.Chenodeoxycholic acid and otherbile acids are naturalligands for FXR. Similar to other nuclear receptors, when activated, FXR translocates to thecell nucleus, forms adimer (in this case a heterodimer withRXR) and binds tohormone response elements on DNA, which up- or down-regulates the expression of certaingenes.[6]

One of the primary functions of FXR activation is the suppression ofcholesterol 7 alpha-hydroxylase (CYP7A1), the rate-limiting enzyme in bile acid synthesis fromcholesterol. FXR does not directly bind to theCYP7A1 promoter. Rather, FXR induces expression ofsmall heterodimer partner (SHP), which then functions to inhibit transcription of theCYP7A1 gene. FXR likewise stimulates the synthesis offibroblast growth factor 19, which also inhibits expression of CYP7A1 and sterol 12-alpha-hydroxylase (CYP8B1) viafibroblast growth factor receptor 4. In this way, anegative feedback pathway is established in which synthesis of bile acids is inhibited when cellular levels are already high.[7]

The absence of FXR in anFXR-/- mouse model led to increased bile acids in the liver, and the spontaneous development ofliver tumors.[8] Reducing the pool of bile acids in theFXR-/- mice by feeding the bile acid sequestering resincholestyramine reduced the number and size of the malignant lesions.[citation needed]

FXR has also been found to be important in regulation of hepatictriglyceride levels.[9] Specifically, FXR activation suppresseslipogenesis and promotesfree fatty acidoxidation byPPARα activation.[9] Studies have also shown the FXR to regulate the expression and activity of epithelial transport proteins involved in fluid homeostasis in the intestine, such as thecystic fibrosis transmembrane conductance regulator (CFTR).[10]

Activation of FXR in diabetic mice reduces plasma glucose and improvesinsulin sensitivity, whereas inactivation of FXR has the opposite effect.[9]

Gastroesophageal adenocarcinoma

[edit]

FXR is an important modulator ofbile acid homeostasis.[11] Loss of FXR or bile-acid dependent inhibition of FXR in progenitor cells at the gastroesophageal junction drives gastroesophagealadenocarcinomacarcinogenesis.[11]

Interactions

[edit]

Farnesoid X receptor has been shown tointeract with:

Ligands

[edit]

A number of ligands for FXR are known, of both natural and synthetic origin.[14][15][16]

Agonists
Antagonists

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000012504Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000047638Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^"Entrez Gene: NR1H4 nuclear receptor subfamily 1, group H, member 4".
  6. ^abForman BM, Goode E, Chen J, Oro AE, Bradley DJ, Perlmann T, et al. (June 1995)."Identification of a nuclear receptor that is activated by farnesol metabolites".Cell.81 (5):687–693.doi:10.1016/0092-8674(95)90530-8.PMID 7774010.
  7. ^Jiang L, Zhang H, Xiao D, Wei H, Chen Y (2021)."Farnesoid X receptor (FXR): Structures and ligands".Computational and Structural Biotechnology Journal.19:2148–2159.doi:10.1016/j.csbj.2021.04.029.PMC 8091178.PMID 33995909.
  8. ^Yang F, Huang X, Yi T, Yen Y, Moore DD, Huang W. Spontaneous development of liver tumors in the absence of the bile acid receptor farnesoid X receptor. Cancer Res. 2007 Feb 1;67(3):863-7. doi: 10.1158/0008-5472.CAN-06-1078. PMID 17283114
  9. ^abcJiao Y, Lu Y, Li XY (January 2015)."Farnesoid X receptor: a master regulator of hepatic triglyceride and glucose homeostasis".Acta Pharmacologica Sinica.36 (1):44–50.doi:10.1038/aps.2014.116.PMC 4571315.PMID 25500875.
  10. ^Mroz MS, Keating N, Ward JB, Sarker R, Amu S, Aviello G, et al. (May 2014)."Farnesoid X receptor agonists attenuate colonic epithelial secretory function and prevent experimental diarrhoea in vivo".Gut.63 (5):808–817.doi:10.1136/gutjnl-2013-305088.PMID 23916961.S2CID 15778582.
  11. ^abBaumeister T, Proaño-Vasco A, Metwaly A, Kleigrewe K, Kuznetsov A, Schömig L, Borgmann M, Khiat M, Anand A, Strangmann J, Böttcher K, Haller D, Dunkel A, Somoza V, Reiter S, Meng C, Thimme R, Schmid RM, Patil DT, Burgermeister E, Huang Y, Sun Y, Wang HH, Wang TC, Abrams JA, Quante M. Loss of FXR or Bile Acid-dependent Inhibition accelerate carcinogenesis of Gastroesophageal Adenocarcinoma. Cell Mol Gastroenterol Hepatol. 2025 Mar 24:101505. doi: 10.1016/j.jcmgh.2025.101505. Epub ahead of print. PMID: 40139565.
  12. ^Zhang Y, Castellani LW, Sinal CJ, Gonzalez FJ, Edwards PA (January 2004)."Peroxisome proliferator-activated receptor-gamma coactivator 1alpha (PGC-1alpha) regulates triglyceride metabolism by activation of the nuclear receptor FXR".Genes & Development.18 (2):157–169.doi:10.1101/gad.1138104.PMC 324422.PMID 14729567.
  13. ^Seol W, Choi HS, Moore DD (January 1995)."Isolation of proteins that interact specifically with the retinoid X receptor: two novel orphan receptors".Molecular Endocrinology.9 (1):72–85.doi:10.1210/mend.9.1.7760852.PMID 7760852.
  14. ^Fiorucci S, Zampella A, Distrutti E (2012). "Development of FXR, PXR and CAR agonists and antagonists for treatment of liver disorders".Current Topics in Medicinal Chemistry.12 (6):605–624.doi:10.2174/156802612799436678.PMID 22242859.
  15. ^Fiorucci S, Mencarelli A, Distrutti E, Zampella A (May 2012). "Farnesoid X receptor: from medicinal chemistry to clinical applications".Future Medicinal Chemistry.4 (7):877–891.doi:10.4155/fmc.12.41.PMID 22571613.
  16. ^Vaz B, de Lera ÁR (November 2012). "Advances in drug design with RXR modulators".Expert Opinion on Drug Discovery.7 (11):1003–1016.doi:10.1517/17460441.2012.722992.PMID 22954251.S2CID 36317393.
  17. ^Ricketts ML, Boekschoten MV, Kreeft AJ, Hooiveld GJ, Moen CJ, Müller M, et al. (July 2007)."The cholesterol-raising factor from coffee beans, cafestol, as an agonist ligand for the farnesoid and pregnane X receptors".Molecular Endocrinology.21 (7):1603–1616.doi:10.1210/me.2007-0133.PMID 17456796.
  18. ^Zhang S, Pan X, Jeong H (May 2015)."GW4064, an agonist of farnesoid X receptor, represses CYP3A4 expression in human hepatocytes by inducing small heterodimer partner expression".Drug Metabolism and Disposition.43 (5):743–748.doi:10.1124/dmd.114.062836.PMC 4407707.PMID 25725071.
  19. ^Carotti A, Marinozzi M, Custodi C, Cerra B, Pellicciari R, Gioiello A, et al. (2014)."Beyond bile acids: targeting Farnesoid X Receptor (FXR) with natural and synthetic ligands".Current Topics in Medicinal Chemistry.14 (19):2129–2142.doi:10.2174/1568026614666141112094058.PMID 25388537. Archived fromthe original on 2021-10-19.
  20. ^Jin L, Feng X, Rong H, Pan Z, Inaba Y, Qiu L, et al. (2013)."The antiparasitic drug ivermectin is a novel FXR ligand that regulates metabolism".Nature Communications.4: 1937.Bibcode:2013NatCo...4.1937J.doi:10.1038/ncomms2924.PMID 23728580.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1osh: A Chemical, Genetic, and Structural Analysis of the nuclear bile acid receptor FXR
    1osh: A Chemical, Genetic, and Structural Analysis of the nuclear bile acid receptor FXR
  • 1osv: STRUCTURAL BASIS FOR BILE ACID BINDING AND ACTIVATION OF THE NUCLEAR RECEPTOR FXR
    1osv: STRUCTURAL BASIS FOR BILE ACID BINDING AND ACTIVATION OF THE NUCLEAR RECEPTOR FXR
  • 1ot7: Structural Basis for 3-deoxy-CDCA Binding and Activation of FXR
    1ot7: Structural Basis for 3-deoxy-CDCA Binding and Activation of FXR
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
FXRTooltip Farnesoid X receptor andLXRTooltip liver X receptormodulators
FXRTooltip Farnesoid X receptor
LXRTooltip Liver X receptor
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