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Dimerization

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Chemical process of joining two molecular entities by bonds of any kind
"Dimer (chemistry)" redirects here. For other uses, seeDimer (disambiguation).
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Inchemistry,dimerization is the process of joining two identical or similarmolecular entities bybonds. The resulting bonds can be either strong or weak. Many symmetricalchemical species are described asdimers, even when themonomer is unknown or highly unstable.[1]

The termhomodimer is used when the two subunits are identical (e.g. A–A) andheterodimer when they are not (e.g. A–B). The reverse of dimerization is often calleddissociation. When two oppositely-chargedions associate into dimers, they are referred to asBjerrum pairs,[2] after Danish chemistNiels Bjerrum.

Noncovalent dimers

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Dimers ofcarboxylic acids are often found in the vapour phase.

Anhydrouscarboxylic acids form dimers by hydrogen bonding of the acidic hydrogen and the carbonyl oxygen. For example,acetic acid forms a dimer in the gas phase, where the monomer units are held together byhydrogen bonds.[3] Many OH-containing molecules form dimers, e.g. thewater dimer.

Dimers that form based on weakelectrostatic interaction and/orvan der Waals interactions have a short lifetime, but can be stabilized through special laboratory setups such asmatrix-isolation. A prominent example is thecarbon dioxide dimer,[4] which is likely to be relevant to Venus atmosphere.[5]

Excimers andexciplexes areexcited structures with a short lifetime. For example,noble gases do not form stable dimers, but they do form theexcimers Ar2*, Kr2* and Xe2* under high pressure and electrical stimulation.[6]

Covalent dimers

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The dimerization ofcyclopentadiene gives dicyclopentadiene, although this might not be readily apparent on initial inspection. This dimerization is reversible.

Molecular dimers are often formed by the reaction of two identical compounds e.g.:2A → A−A. In this example,monomer "A" is said to dimerize to give the dimer "A−A".

Dicyclopentadiene is an asymmetrical dimer of twocyclopentadiene molecules that have reacted in aDiels-Alder reaction to give the product. Upon heating, it "cracks" (undergoes a retro-Diels-Alder reaction) to give identical monomers:

C10H122C5H6{\displaystyle {\ce {C10H12 -> 2 C5H6}}}

Many nonmetallic elements occur as dimers:hydrogen,nitrogen,oxygen, and thehalogensfluorine,chlorine,bromine andiodine. Some metals form a proportion of dimers in their vapour phase:dilithium (Li2),disodium (Na2),dipotassium (K2),dirubidium (Rb2) anddicaesium (Cs2). Such elemental dimers arehomonucleardiatomic molecules.

Polymer chemistry

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In the context ofpolymers, "dimer" also refers to thedegree of polymerization 2, regardless of the stoichiometry orcondensation reactions.

One case where this is applicable is withdisaccharides. For example,cellobiose is a dimer ofglucose, even though the formation reaction produceswater:

2C6H12O6C12H22O11+H2O{\displaystyle {\ce {2 C6H12O6 -> C12H22O11 + H2O}}}

Here, the resulting dimer has a stoichiometry different from the initial pair of monomers.

Disaccharides need not be composed of the samemonosaccharides to be considered dimers. An example issucrose, a dimer offructose and glucose, which follows the same reaction equation as presented above.

Amino acids can also form dimers, which are calleddipeptides. An example isglycylglycine, consisting of twoglycine molecules joined by apeptide bond. Other examples includeaspartame andcarnosine.

Inorganic and organometallic dimers

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Many molecules and ions are described as dimers, even when the monomer is elusive.

Boranes

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Borane and diborane

Diborane (B2H6) is an dimer ofborane, which is elusive and rarely observed. Almost all compounds of the type R2BH exist as dimers.[7]

Organoaluminium compounds

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Trimethylaluminium dimer

Trialkylaluminium compounds can exist as either monomers or dimers, depending on thesteric bulk of the groups attached. For example,trimethylaluminium exists as a dimer, but trimesitylaluminium adopts a monomeric structure.[8]

Organochromium compounds

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Cyclopentadienylchromium tricarbonyl dimer exists in measureable equilibrium quantities with the monometallic radical(C5H5)Cr(CO)3.[9]

Biochemical dimers

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Pyrimidine dimers

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Pyrimidine dimers (also known as thymine dimers) are formed by aphotochemical reaction from pyrimidineDNA bases when exposed to ultraviolet light.[8] This cross-linking causesDNA mutations, which can becarcinogenic, causingskin cancers.[8] Whenpyrimidine dimers are present, they can blockpolymerases, decreasing DNA functionality until it is repaired.[8]

Protein dimers

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Tubulin dimer

Protein dimers arise from the interaction between twoproteins which can interact further to form larger and more complexoligomers.[10] For example,tubulin is formed by the dimerization ofα-tubulin andβ-tubulin and this dimer can thenpolymerize further to makemicrotubules.[11] For symmetric proteins, the larger protein complex can be broken down into smaller identicalprotein subunits, which then dimerize to decrease the genetic code required to make the functional protein.[10]

G protein-coupled receptors

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As the largest and most diverse family ofreceptors within the human genome,G protein-coupled receptors (GPCR) have been studied extensively, with recent studies supporting their ability to form dimers.[12] GPCR dimers include both homodimers and heterodimers formed from related members of the GPCR family.[13] While not all, some GPCRs require dimerization to function, such asGABAB-receptor, emphasizing the importance of dimers in biological systems.[14]

Receptor tyrosine kinase dimerization

Receptor tyrosine kinase

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Much like for G protein-coupled receptors, dimerization is essential forreceptor tyrosine kinases (RTK) to perform their function insignal transduction, affecting many different cellular processes.[15] RTKs typically exist as monomers, but undergo aconformational change uponligand binding, allowing them to dimerize with nearby RTKs.[16][17] The dimerization activates thecytoplasmickinasedomains that are responsible for furthersignal transduction.[15]

See also

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Wikimedia Commons has media related toDimers.

References

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  1. ^"Dimerization".
  2. ^Adar, Ram M.; Markovich, Tomer; Andelman, David (2017-05-17). "Bjerrum pairs in ionic solutions: A Poisson-Boltzmann approach".The Journal of Chemical Physics.146 (19): 194904.arXiv:1702.04853.Bibcode:2017JChPh.146s4904A.doi:10.1063/1.4982885.ISSN 0021-9606.PMID 28527430.S2CID 12227786.
  3. ^Karle, J.; Brockway, L. O. (1944)."An Electron Diffraction Investigation of the Monomers and Dimers of Formic, Acetic and Trifluoroacetic Acids and the Dimer of Deuterium Acetate 1".Journal of the American Chemical Society.66 (4):574–584.doi:10.1021/ja01232a022.ISSN 0002-7863.
  4. ^Fredin, Leif; Nelander, Bengt; Ribbegård, Göran (1974-12-01)."On the dimerization of carbon dioxide in nitrogen and argon matrices".Journal of Molecular Spectroscopy.53 (3):410–416.doi:10.1016/0022-2852(74)90077-0.ISSN 0022-2852.
  5. ^Dinu, Dennis F.; Bartl, Pit; Quoika, Patrick K.; Podewitz, Maren; Liedl, Klaus R.; Grothe, Hinrich; Loerting, Thomas (2022-05-19)."Increase of Radiative Forcing through Midinfrared Absorption by Stable CO2 Dimers?".The Journal of Physical Chemistry A.126 (19):2966–2975.doi:10.1021/acs.jpca.2c00857.ISSN 1089-5639.PMC 9125687.PMID 35533210.
  6. ^Birks, J B (1975-08-01)."Excimers".Reports on Progress in Physics.38 (8):903–974.doi:10.1088/0034-4885/38/8/001.ISSN 0034-4885.S2CID 240065177.
  7. ^Shriver, Duward (2014).Inorganic Chemistry (6th ed.). W.H. Freeman and Company. pp. 306–307.ISBN 9781429299060.
  8. ^abcdShriver, Duward (2014).Inorganic Chemistry (6th ed.). W.H. Freeman and Company. pp. 377–378.ISBN 9781429299060.
  9. ^Adams, Richard D.; Collins, Douglas E.; Cotton, F. Albert (1974). "Unusual structural and magnetic resonance properties of dicyclopentadienylhexacarbonyldichromium".Journal of the American Chemical Society.96 (5):749–754.doi:10.1021/ja00810a019.
  10. ^abMarianayagam, Neelan J.; Sunde, Margaret; Matthews, Jacqueline M. (2004)."The power of two: protein dimerization in biology".Trends in Biochemical Sciences.29 (11):618–625.doi:10.1016/j.tibs.2004.09.006.ISSN 0968-0004.PMID 15501681.
  11. ^Cooper, Geoffrey M. (2000)."Microtubules".The Cell: A Molecular Approach. 2nd Edition.
  12. ^Faron-Górecka, Agata; Szlachta, Marta; Kolasa, Magdalena; Solich, Joanna; Górecki, Andrzej; Kuśmider, Maciej; Żurawek, Dariusz; Dziedzicka-Wasylewska, Marta (2019-01-01), Shukla, Arun K. (ed.),"Chapter 10 - Understanding GPCR dimerization",Methods in Cell Biology, G Protein-Coupled Receptors, Part B,149, Academic Press:155–178,doi:10.1016/bs.mcb.2018.08.005,ISBN 9780128151075,PMID 30616817,S2CID 58577416, retrieved2022-10-27
  13. ^Rios, C. D.; Jordan, B. A.; Gomes, I.; Devi, L. A. (2001-11-01)."G-protein-coupled receptor dimerization: modulation of receptor function".Pharmacology & Therapeutics.92 (2):71–87.doi:10.1016/S0163-7258(01)00160-7.ISSN 0163-7258.PMID 11916530.
  14. ^Lohse, Martin J (2010-02-01)."Dimerization in GPCR mobility and signaling".Current Opinion in Pharmacology. GPCR.10 (1):53–58.doi:10.1016/j.coph.2009.10.007.ISSN 1471-4892.PMID 19910252.
  15. ^abHubbard, Stevan R (1999-04-01)."Structural analysis of receptor tyrosine kinases".Progress in Biophysics and Molecular Biology.71 (3):343–358.doi:10.1016/S0079-6107(98)00047-9.ISSN 0079-6107.PMID 10354703.
  16. ^Lemmon, Mark A.; Schlessinger, Joseph (2010-06-25)."Cell Signaling by Receptor Tyrosine Kinases".Cell.141 (7):1117–1134.doi:10.1016/j.cell.2010.06.011.ISSN 0092-8674.PMC 2914105.PMID 20602996.
  17. ^Lemmon, Mark A.; Schlessinger, Joseph; Ferguson, Kathryn M. (2014-04-01)."The EGFR Family: Not So Prototypical Receptor Tyrosine Kinases".Cold Spring Harbor Perspectives in Biology.6 (4): a020768.doi:10.1101/cshperspect.a020768.ISSN 1943-0264.PMC 3970421.PMID 24691965.
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