Phylodynamic Analysis | 176 genomes | 6 Mar 2020 Phylogenetic analysis of nCoV-2019 genomes 6-Mar-2020 Andrew Rambaut, University of Edinburgh, Edinburgh UK a.rambaut@ed.ac.uk This is a brief report outlining a simple phylogenetic analysis of publicly shared genome… |      | 17 | 149645 | April 2, 2020 |
Timing and molecular characterisation of the transmission to cattle of H5N1 influenza A virus genotype D1.1, clade 2.3.4.4b |  | 1 | 7924 | February 21, 2025 |
Near Real-Time Genomic Characterization of the 2025 Sudan Ebolavirus Outbreak in Uganda’s Index Case: Insights into Evolutionary Origins |  | 0 | 10197 | February 3, 2025 |
Fieldbioinformatics Updates |  | 0 | 1797 | January 13, 2025 |
Preliminary analysis of 98 genomic sequences of MPXV clade Ib cases from Burundi, July to September 2024 |  | 0 | 2926 | November 19, 2024 |
October 2024 Lassa virus introduced into Iowa, USA from Liberia |  | 0 | 1934 | November 18, 2024 |
APOBEC3 deaminase editing supports human-to-human transmission in escalating Mpox outbreaks of both Clade Ia and Ib in Kinshasa, Democratic Republic of the Congo, July-September 2024 |  | 0 | 6550 | October 22, 2024 |
Clade Ib Mpox in the Democratic Republic of the Congo (DRC): clinical and virological report of the first case in Kinshasa, the capital city |   | 2 | 4853 | September 10, 2024 |
Introducing Pathoplexus |  | 0 | 2345 | August 27, 2024 |
Draft genome of the first case of mpox virus detected in Kenya, August 2024 |  | 0 | 2745 | August 22, 2024 |
Preliminary analysis of full genome sequences of 58 MPXV clade Ib cases from Kamituga and Kamanyola, South-Kivu , DRC |   | 1 | 4170 | August 9, 2024 |
Preliminary report on genomic epidemiology of the 2024 H5N1 influenza A virus outbreak in U.S. cattle (Part 2 of 2) |   | 1 | 12514 | August 4, 2024 |
Emergence of a novel reassortant Oropouche virus drives persistent outbreaks in the Brazilian Amazon region from 2022 to 2024 |  | 1 | 15082 | July 24, 2024 |
Mpox Clade Ib cases in Goma |  | 0 | 5502 | March 5, 2024 |
Mpox virus resurgence in New York City, 2024 |  | 0 | 3987 | June 11, 2024 |
Preliminary report on genomic epidemiology of the 2024 H5N1 influenza A virus outbreak in U.S. cattle (Part 1 of 2) |    | 3 | 24704 | May 8, 2024 |
Note about availability of H5N1 2.3.4.4b consensus sequences from cattle and other species: |   | 1 | 8968 | May 5, 2024 |
Unbiased metagenomic sequencing reveals Hepatitis A virus as an underestimated cause of undiagnosed febrile illness in Kenya |  | 0 | 3584 | April 11, 2024 |
Novel Clade I genome sequences from the ongoing mpox virus outbreak of Kamituga in South Kivu province, Democratic Republic of Congo |   | 2 | 10718 | March 14, 2024 |
Special Issue of Viruses Journal: Challenges in HIV Diversity |  | 0 | 3757 | March 1, 2024 |
Ebola virus disease case in Equateur Province, DRC is a new spillover |      | 9 | 15955 | February 5, 2024 |
First outbreak of Dengue virus fever in Chad, 2023 |  | 0 | 4266 | December 24, 2023 |
Preliminary Results from two novel ARTIC-style amplicon based sequencing approaches for RSV A and RSV B |  | 1 | 11815 | December 4, 2023 |
Chikungunya virus Genomic characterization during an outbreak in Kedougou, Southeastern Senegal, 2023 |  | 0 | 2295 | November 15, 2023 |
SARS-CoV-2 evolution, post-Omicron |  | 1 | 42752 | August 30, 2023 |
NIAID Data Ecosystem Discovery Portal |  | 0 | 2781 | August 16, 2023 |
Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA |  | 0 | 9633 | June 5, 2022 |
Electron microscopy and a sequence-independent, single-primer amplification (SISPA) viromics approach for monkeypox virus genome determination |  | 0 | 7095 | September 14, 2022 |
Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance |  | 0 | 10619 | November 7, 2022 |
Vibrio Cholerae Genomics |  | 0 | 3794 | June 30, 2023 |