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Swift
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Papers

Highlights - Technology

Highlights - Applications

Swift Language and Runtime Technology

Justin M. Wozniak, Hemant Sharma, Timothy G. Armstrong, Michael Wilde, Jonathan D. Almer, Ian T. FosterBig data staging with MPI-IO for interactive X-ray scienceProc. IEEE/ACM Symposium on Big Data Computing2014. [pdf]
James C. Phillips, John E. Stone, Kirby L. Vandivort, Timothy G. Armstrong, Justin M. Wozniak, Michael Wilde, Klaus SchultenPetascale Tcl with NAMD, VMD, and Swift/TProc. Workshop for High Performance Technical Computing in Dynamic Languages at SC, 2014.2014. [pdf]
Justin M. Wozniak, Michael Wilde, Ian T. FosterLanguage features for scalable distributed-memory dataflow computingProc Data-flow Execution Models for Extreme-scale Computing at PACT2014. [pdf]
Timothy G. Armstrong, Justin M. Wozniak, Michael Wilde, Ian T. FosterCompiler techniques for massively scalable implicit task parallelismProc. SC2014. [pdf]
Scott J. Krieder, Justin M. Wozniak, Timothy Armstrong, Michael Wilde, Daniel S. Katz, Benjamin Grimmer, Ian T. Foster, Ioan RaicuDesign and evaluation of the GeMTC framework for GPU-enabled many-task computingProc. HPDC2014. [pdf]
Ketan Maheshwari, Justin M. Wozniak, Hao Yang, Daniel S. Katz, Matei Ripeanu, Victor Zavala, Michael WildeEvaluating storage systems for scientific data in the cloudProc. ScienceCloud (Best Paper Awardee)2014. [pdf]
Justin M. Wozniak, Timothy G. Armstrong, Daniel S. Katz, Michael Wilde, Ian T. FosterToward computational experiment management via multi-language applicationsProc. ASCR Workshop on Software Productivity for Extreme-Scale Science2014. [pdf]
Michael Wilde, Justin M. Wozniak, Timothy Armstrong, Daniel S. Katz, Ian T. Foster Productive composition of extreme-scale applications using implicitly parallel dataflowProc. ASCR Workshop on Software Productivity for Extreme-Scale Science2014. [pdf]
Ketan Maheshwari, David Kelly, Scott J. Krieder, Justin M. Wozniak, Daniel S. Katz, Zhi-Gang Mei, Mainak MookherjeeReusability in science: From initial user engagement to dissemination of resultsProc. Workshop on Sustainable Software for Science: Practice and Experiences at SC2013. [pdf]
Ketan Maheshwari, Alex Rodriguez, David Kelly, Ravi Madduri, Justin M. Wozniak, Michael Wilde, Ian T. FosterExtending the Galaxy portal with parallel and distributed execution capabilityProc. DataCloud2013. [pdf]
Ketan Maheshwari, Alex Rodriguez, David Kelly, Ravi Madduri, Justin M. Wozniak, Michael Wilde, Ian T. FosterEnabling multi-task computation on Galaxy-based gateways using SwiftProc. Science Gateway Institute Workshop2013. [pdf]
Justin M. Wozniak, Timothy G. Armstrong, Ketan Maheshwari, Ewing L. Lusk, Daniel S. Katz, Michael Wilde, Ian T. FosterTurbine: A distributed-memory dataflow engine for high performance many-task applications.Fundamenta Informaticae 128(3)2013. [pdf]
Justin M. Wozniak, Tom Peterka, Timothy G. Armstrong, James Dinan, Ewing Lusk, Michael Wilde, Ian T. FosterDataflow coordination of data-parallel tasks via MPI 3.0Proc. EuroMPI2013. [pdf]
Justin M. Wozniak, Michael Wilde, and Daniel S. KatzJETS: Language and system support for many-parallel-task workflows J. Grid Computing 11(3), 2013.2013. [pdf]
Justin M. Wozniak, Timothy G. Armstrong, Michael Wilde, Daniel Katz, Ewing Lusk, Ian T. FosterSwift/T: Large-scale application composition via distributed-memory data flow processingProc CCGrid2013. [pdf]
Ketan Maheshwari, Kenneth Birman, Justin M. Wozniak, Devin Van ZandtEvaluating cloud computing techniques for smart power grid design using parallel scriptingProc CCGrid2013. [pdf]
Justin M. Wozniak, Anthony Chan, Timothy G. Armstrong, Michael Wilde, Ewing Lusk, Ian T. FosterA model for tracing and debugging large-scale task-parallel programs with MPEProc. Workshop on Leveraging Abstractions and Semantics in High-performance Computing at PPoPP2013. [pdf]
Justin M. Wozniak, Timothy G. Armstrong, Michael Wilde, Ketan Maheshwari, Daniel S. Katz, Matei Ripeanu, Ewing L. Lusk, and Ian T. FosterTurbine: A distributed-memory dataflow engine for extreme-scale many-task applicationsProc. Workshop on Scalable Workflow Enactment Engines and Technologies at SIGMOD2012. [pdf]
Timothy G. Armstrong, Justin M. Wozniak, Michael Wilde, Ketan Maheshwari, Daniel S. Katz, Matei Ripeanu, Ewing L. Lusk, and Ian T. FosterExM: High level dataflow programming for extreme-scale systemsProc. HotPar (poster series)2012. [pdf]
Michael Wilde, Mihael Hategan, Justin M. Wozniak, Ben Clifford, Daniel S. Katz, Ian FosterSwift: A language for distributed parallel scriptingParallel Computing2011. [pdf]
Mihael Hategan, Justin Wozniak, Ketan MaheshwariCoasters: uniform resource provisioning and access for clouds and grids4th IEEE/ACM International Conference on Utility and Cloud Computing2011. [pdf]
Michael Wilde, Ian Foster, Kamil Iskra, Pete Beckman, Zhao Zhang, Allan Espinosa, Mihael Hategan, Ben Clifford, Ioan RaicuParallel Scripting for Applications at the Petascale and BeyondComputer, Vol. 42, No. 112009. [pdf]
Zhao Y., Hategan, M., Clifford, B., Foster, I., vonLaszewski, G., Raicu, I., Stef-Praun, T. and Wilde, MSwift: Fast, Reliable, Loosely Coupled Parallel ComputationIEEE International Workshop on Scientific Workflows2007. [pdf]

Swift Applications

Agarwal, K., Chase, J., Schuchardt, K., Scheibe, T., Palmer, B., Elsethagen, T.Design and Implementation of ‘Many Parallel Task’ Hybrid Subsurface Model4th Workshop on Many-Task Computing on Grids and Supercomputers2011. [pdf]
Adhikari, A. Peng, J., Wilde, M., Xu, J., Freed, K., Sosnick, T.Modeling large regions in proteins: Applications to loops, termini, and foldingProtein Science2011. [pdf]
Boker, S., Neale, M., Maes, H., Wilde, M., Spiegel, M., Brick, T., Spies, J., Estabrook, R., Kenny, S., Bates, T., et al.OpenMx: An Open Source Extended Structural Equation Modeling FrameworkPsychometrika - Vol. 76, No.2, 306-317April 2011 [pdf]
Woitaszek, M., Dennis, J., Sines, T.Parallel High-resolution Climate Data Analysis using Swift.4th Workshop on Many-Task Computing on Grids and Supercomputers2011. [pdf]
Uram, T., Papka, M., Hereld, M., Wilde, M.A solution looking for lots of problems: Generic Portals for Science InfrastructureProceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery2011. [pdf]
Wu, W., Uram, T., Wilde, M., Hereld, M., Papka, M.Accelerating Science Gateway Development with Web 2.0 and SwiftTG 10 - Proceedings of the 2010 TeraGrid Conference2010. [pdf]
Joe DeBartolo, Glen Hocky, Michael Wilde, Jinbo Xu, Karl F. Freed, and Tobin R. SosnickProtein Structure Prediction Enhanced with Evolutionary Diversity: SPEEDProtein Science JournalJan 2010.
Andriy Fedorov, Benjamin Clifford, Simon K. Warfield, Ron Kikinis, Nikos ChrisochoidesNon-Rigid Registration for Image-Guided Neurosurgery on the TeraGrid: A Case StudyCollege of William and Mary Technical Report2009. [pdf]
Stef-Praun, T., Clifford, B., Foster, I., Hasson, U., Hategan, M., Small, S., Wilde, M and Zhao,Y.Accelerating Medical Research using the Swift Workflow SystemHealth Grid2007. [pdf]
Stef-Praun, T., Madeira, G., Foster, I., and Townsend, R.Accelerating solution of a moral hazard problem with Swifte-Social Science2007. [pdf]

Virtual Data Language Applications

Nefedova, V., Jacob, R., Foster, I., Liu, Y., Liu, Z., Deelman, E., Mehta, G. and Vahi, K.,Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System.2nd IEEE International Conference on eScience and Grid Computing,2006. [pdf]
Horn, J.V., Dobson, J., Woodward, J., Wilde, M., Zhao, Y., Voeckler, J. and Foster, I.Grid-Based Computing and the Future of Neuroscience Computation.Methods in Mind, MIT Press,2006.
Sulakhe, D., Rodriguez, A., Wilde, M., Foster, I. and Maltsev, N.,Using Multiple Grid Resources for Bioinformatics Applications in GADU.IEEE/ACM International Symposium on Cluster Computing and Grid,2006. [pdf]
Sulakhe, D., Rodriguez, A., D'Souza, M., Wilde, M., Nefedova, V., Foster, I. and Maltsev, N.GNARE: An Environment for Grid-Based High-Throughput Genome Analysis.Journal of Clinical Monitoring and Computing.2005. [pdf]
Bardeen, M., Gilbert, E., Jordan, T., Nepywoda, P., Quigg, E., Wilde, M. and Zhao, Y.The QuarkNet/Grid Collaborative Learning e-Lab.Future Generation Computer Systems, 22 (6),700-708.2005. [pdf]
Arbree, A., Avery, P., Bourilkov, D., Cavanaugh, R., Rodriguez, J., Graham, G., Wilde, M. and Zhao, Y.,Virtual Data in CMS Analysis.Computing in High Energy and Nuclear Physics,2003. [pdf]
Arbree, A., Avery, P., Bourilkov, D., Cavanaugh, R., Katageri, S., Graham, G., Rodriguez, J., Voeckler, J. and Wilde, M.,Virtual Data in CMS Production.Computing in High Energy and Nuclear Physics,2003. [pdf]
Annis, J., Zhao, Y., Voeckler, J., Wilde, M., Kent, S. and Foster, I.,Applying Chimera Virtual Data Concepts to Cluster Finding in the Sloan Sky Survey.SC2002, Baltimore, MD,2002. [pdf]
Zhao, Y.Virtual Galaxy Clusters: An Application of the GriPhyN Virtual Data Toolkit to Sloan Digital Sky Survey Data.MS thesis, University of Chicago, GriPhyN-2002-06,2002.

Research Leading up to Swift

Zhao, Y., Wilde, M. and Foster, I.Virtual Data Language: A Typed Workflow Notation for Diversely Structured Scientific Data.Taylor, I.J., Deelman, E., Gannon, D.B. and Shields, M. eds. Workflows for eScience, Springer,2007.258-278.
Zhao, Y., Wilde, M. and Foster, I.,Applying the Virtual Data Provenance Model.International Provenance and Annotation Workshop, Chicago, Illinois,2006. [pdf]
Vöckler, J.-S., Mehta, G., Zhao, Y., Deelman, E. and Wilde, M.,Kickstarting Remote Applications.2nd International Workshop on Grid Computing Environments,2006. [pdf]
Zhao, Y., Dobson, J., Foster, I., Moreau, L. and Wilde, M.A Notation and System for Expressing and Executing Cleanly Typed Workflows on Messy Scientific Data.SIGMOD Record 34 (3)37-432005. [pdf]
Moreau, L., Zhao, Y., Foster, I., Voeckler, J. and Wilde, M.,XDTM: XML Data Type and Mapping for Specifying Datasets.European Grid Conference,2005. [pdf]
Zhao, Y., Wilde, M., Foster, I., Voeckler, J., Jordan, T., Quigg, E. and Dobson, J.,Grid Middleware Services for Virtual Data Discovery, Composition, and Integration.2nd International Workshop on Middleware for Grid Computing,2004. [pdf]
Foster, I., Voeckler, J., Wilde, M. and Zhao, Y.,The Virtual Data Grid: A New Model and Architecture for Data-Intensive Collaboration.Conference on Innovative Data Systems Research,2003. [pdf]
Foster, I., Voeckler, J., Wilde, M. and Zhao, Y.,Chimera: A Virtual Data System for Representing, Querying, and Automating Data Derivation.14th Intl. Conf. on Scientific and Statistical Database Management, Edinburgh, Scotland,2002. [pdf]
Vöckler, J.-S., Wilde, M. and Foster, I.The GriPhyN Virtual Data System.Technical Report GriPhyN-2002-02,2002.
Zhao, Y., Wilde, M., Foster, I., Voeckler, J., Dobson, J., Gilbert, E., Jordan, T. and Quigg, E.Virtual Data Grid Middleware Services for Data-intensive Science.Concurrency and Computation: Practice and Experience, 18 (6),595-608.2000. [pdf]

Related Research

Armstrong, T.Integrating Task Parallelism into the Python Programming LanguageUniversity of Chicago, Department of Computer ScienceMay 2011 [pdf]
Moreau, L. and others,The First Provenance Challenge,Concurrency and Computation: Practice and Experience.2008. [pdf]
Raicu, I., Zhao Y., Dumitrescu, C., Foster, I. and Wilde, MFalkon: a Fast and Light-weight tasK executiON frameworkSupercomputing Conference2007. [pdf]
von Laszewski, G., Hategan, M. and Kodeboyina, D.Java CoG Kit Workflow.Taylor, I.J., Deelman, E., Gannon, D.B. and Shields, M. eds. Workflows for Science,2007.340-356. [pdf]
Meyer, L., Scheftner, D., Voeckler, J., Mattoso, M., Wilde, M. and Foster, I.,An Opportunistic Algorithm for Scheduling Workflows on Grids.VECPAR'06, Rio De Janiero,2006. [pdf]
Malewicz, G., Foster, I., Rosenberg, A. and Wilde, M.,A Tool for Prioritizing DAGMan Jobs and Its Evaluation.IEEE International Symposium on High Performance Distributed Computing,2006. [pdf]
The Swift project is supported by the National Science Foundation and US Department of Energy Office of Science, with additional support from the National Institutes of Health, Argonne National Laboratory and the University of Chicago Computation Institute.
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