Passerea, as defined by Jarvis et al. (2014), is not a clade in either Kuhl et al. (2021) or Stiller et al. (2024). The Jarvis et al. definition and descriptive comments make no sense if applied to either paper. Since I need a name for a clade including the Passeriformes, I've borrowed the name Passerea and redefined it to be compatible with the Stiller et al. topology. Passerea was clearly intended to be the sister to what is called Columbaves in Stiller et al. This means that Otidimorphae (turacos, bustards, and cuckoos) is no longer part of "Passerea". Otherwise, it is unchanged. The next branch in Neoaves is Elementaves. It's sister clade is called Telluraves, so the new "Passerea" is Elementaves + Telluraves.
This page is titled Gruae because an earlier analysis (Jarvis et al.,2014) indicated that the Opisthocomiformes (Hoatzin), Gruiformes(Cranes, Rails, etc.) and Charadriiformes (Shorebirds) form a clade. Jarvis et al. found that bootstrap support for this clade was 91%. Supportfor Gruimorphae (Gruiformes plus Charadriiformes) was even higher (96%). Suh et al. (2015) also obtained the same clade. More recently, Kuhl et al.(2020) found Gruimorphae, but not Gruae, but the OpenWings project did findGruae in its 2019 supertree.
On the other hand, Prum et al. (2015) put each component of Gruae in adifferent place, as did Braun and Kimball (2021). I now have lessconfidence in Gruae. There's a real possibility that it merelyappears to be a clade. Indeed, one of Jarvis et al.'s alternativetrees had the Hoatzin on its own branch, rather than part of Gruae. As of2021, more recent studies have mixed on this question, without making muchprogress in resolving the issue of where exactly these three orders fit inthe avian tree.
In other words, the Hoatzin problem is still a problem, as are severalother issues in the early avian tree. The sad truth is that it's still notpossible to find an alternate that is significantly better than thisarrangement. As a result, I'm leaving these pages under the Gruae umbrella.
The Opisthocomimorphae contain a single extant species, the Hoatzin, and are restricted to South America (mainly in the Amazon and Orinoco basins). This was not always true. There is fossil evidence of Opisthocomiformes from both Africa and Europe. More specifically, there are fossils from Namibia (Mayr, Alvarenga, and Mourer-Chauviré, 2011), Kenya (Mayr, 2014c), and France (Mayr and De Pietri, 2014), as well as from South America. There is also a fossil from the Green River Formation in Wyoming that has some similarities to Opisthocomimorphae (Olson, 1992), but its true affinites are unknown and could be related to cuckoos or turacos.
A morphological analysis of modernOpisthocomus, and fossilHoazinavis (Brazil, 22-24 mya),Protoazin (France, 34 mya), andNamibiavis (Namibia and Kenya, 15-17.5 mya), foundHoazinavis most closely related to modernOpisthocomus, followed byProtoazin, withNamibiavis the most distant relative.
A long list of living bird families have been considered the closet relatives of the Hoatzin, including seriemas, cuckoos, turacos, rails, doves, and others. The lack of any close relatives justifies placing it in its own superorder. Fain and Houde (2004) and Ericson et al. considered it part of Metaves. The TiF list currently follows Jarvis et al. (2014), who put it as the basal taxon in Gruae. However, the bootstrap support is only 91%, so there is uncertainty about this. The Hoatzin could belong to one of the other high level groups, or even form its own high level group (Jarvis et al, 2014, Fig. 3b).
Gruimorphae consists of two groups: Gruiformes and Charadriiformes. TheGruiformes are covered on this page.Click here forthe Charadriiformes.
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Gruiform Family Tree |
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All sorts of taxa have been previously been included in theGruiformes, which formerly seemed to serve as a waste-bin taxon. Themesites, kagu, and sunbittern were once considered Gruiformes. Thisversion of the Gruiformes is a more coherent clade. The family order isbased on Fain et al. (2007) and Hackett et al. (2008) for the separation ofthe Sarothruridae. Mayr (2008a) discusses both DNA and morphologicalsupport for this clade (without Sarothruridae). This arrangement is stillcurrent in 2021.
The trumpeters are an ancient lineage, probably becoming distinct fromthe limpkins and cranes in the Paleocene or Eocene. Nonetheless, thecurrent crop of trumpeters are quite closely related. Indeed, Ribas etal. (2012) estimate that the common ancestor of all the extanttrumpeters lived about 3 million years ago. At some point within thelast few million years, only one trumpeter species left present-daydescendants. Since the trumpeters have been around roughly 50 millionyears, it is likely that many species of trumpeters died out. Thissuggests that extinction plays a very important role in the biodiversitythat we see, and that it hides much avian history.
Although the SACC arranges the 8 recognized subspecies oftrumpeter into 3 species, I currently recognize 6 species. Oppenheimerand Silveira(2009) suggest thatinterjecta is indistinguishable fromdextralis. Ribas et al. (2012) found 8 genetically distinct lineages,includinginterjecta. However, the genetic distance betweeninterjecta anddextralis was small. The subspeciesobscura was slightly more distinct, having separated roughly500,000 years ago. The case for treating these as separate species isweak. For now I group them all asP. obscura. The otherraces of trumpeter are more distinct from one another, having likelyseparated from nearly 1 to about 2 million years ago. In the case ofnapensis andochroptera, there is no sign of interbreedingin spite of a range overlap. This suggests they are separate species,and provides support for treating the remaining trumpeters as separatespecies.
Ribas et al. (2012) also show how the separation of the trumpeters relates to the formation of various riverine barriers in the Amazon region.The various trumpeters inhabit several of the well-known areas of endemismin the Amazon. If other types of animal show a similar pattern and timing of separation, it will help explain the existence of these areasof endemism.
The additional English names are those used by Hellmayr and Conover (1942),sometimes for subspecies.
The basic structure of the crane family has been known for some time. Ifollow H&M-4 concerning crane genera, which divides the cranes into fourgenera and recognizes the deep division between the crowned cranes and the rest by putting the genusBalearica in its own subfamily. Some authorsfurther divide the cranes, but not all of these divisions fit the genetic data. This was already visible in the DNA hybridization analysis of Krajewski (1989). It was even clearer in the cytochrome-b analysis of Krajewski and Fetzner(1994). Fain, Krajewski, and Houde (2007) refine this in a multi-gene analysis.The most recent analysis is that of Krajewski et al. (2010). They use thecomplete mitochondrial genome, and their analysis is followed here.
The Wattled Crane, formerlyGrus carunculatus, has been moved togenusBugeranus (Gloger 1842). This is because it is a distinctivespecies, compared with its closest relatives (Anthropoides) and ittheir common ancestor seems to have lived about 7 mya (Krajewski et al.,2010). Together with the Demoiselle and Blue Cranes, they form a clade thatsplit from the other clades roughly 11 mya, so they get a new genus too,the aforementionedAnthropoides (Vieillot 1816, typevirgo).Thus they are Demoiselle Crane,Anthropoides virgo and BlueCrane,Anthropoides paradiseus.
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Heliornithidae (Finfoot) tree |
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Sarothruridae (Flufftail) tree |
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There have been suggestions that this group deserves recognition as a family since atleast Sibley and Ahlquist (1985). Hackett et al. (2008) found thatSarothrura is more closely related to the finfoots than to the rails. Garcia-R. et al. (2014a) found that same is true ofCanirallus, andthat it is more closely related toSarothrura than to the finfoots.Accordingly, they are placed in a separate family.
Canirallus /Mentocrex Split:The genusCanirallus has been split as it was found that part ofthe genus belonged to the Sarothruridae, and part to the Raillidae. SeeBoast et al. (2019), Kirchman et al. (2021), and Oswald et al. (2021).According, one species is retained inCanirallus, the Gray-throatedRail,Canirallus oculeus. The other two move toMentocrex(JL Peters 1932), typekioloides.Canirallus moves back tothe Rallidae, whileMentocrex remains in Sarothruridae.
The Tsingy Wood Rail,Mentocrex beankaensis, has been newlydiscovered within the Madagascan Wood Rail complex. See Goodman et al.(2011).
Livezey (1998) suggested thatRallicula (formerly part ofRallina) may also belong with the flufftails based on aphylogenetic analysis of osteological, myological, and integumentarycharacters.
Finally, recently discovered ancient DNA evidence indicates that boththe extinct cave-rails of the Caribbean (Nesotrochis) and the extinct adzebills of New Zealand (Aptornis) are in the flufftail clade. Given their ancientness, I've ranked themboth as subfamilies in Sarothruridae. See Oswald et al. (2021) and Boast et al.(2019). Although these lineages are ancient, the final extinctions happenedfairly recently.
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Click for Rallidae species tree |
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As I write, the most comprehensive published phylogeny of the rails isGarcia-R. and Matzke (2021). The papers by Kirchman et al. (2021) andBoast et al. (2019) are also quite helpful. Garcia-R. and Matzke (2021)combine molecular data with morphological data from Livezey (1998) toprovide a nearly complete phylogeny of the rails.
However, that is not quite what I'm using for TiF. There are a numberof species where DNA was available, but not used by Garcia-R. and Matzke. In fact, some of that DNA is even from another Garcia-R. paper (Garcia-R.and Trewick, 2015). There are other examples of unused DNA, and I'vemodified the Garcia-R./Matzke phylogeny in an attempt to incorporate thisextra DNA data. This is made considerably easier by the fact that some ofthe extra taxa involve entire clades. In particular, Maley and Brumfield(2013) studied the Clapper/King Rail clade; Garcia-R. and Trewick (2015)examined the swamphens; Groenenberg et al. (2008) focused on the moorhensand Slikas et al. (2002) focused on a clade in the Zapornini (their clade3). In these cases, I just pulled out the version of each clade from theGarcia-R. and Matzke phylogeny and dropped in a replacement.
Other additional DNA involved an isolated species or species pair, andwas a little more difficult to weave in. In some of these cases it wasimpossible to get a consensus. For this, I consulted the papers by Trewick(1997), Kirchman (2012), Boast et al. (2019), Stervander et al. (2019),Chaves et al. (2020), Garcia-R. et al. (2020), and Kirchman et al. (2021).Besides published papers, I also used the 2014 reanalysis of archived databy Raty on BirdForum, for the Speckled Rail,Creciscus notatus.
To help see what DNA was used,, I've added some special markings to thespecies tree. If Garcia-R. and Matzke used DNA,the species name has a trailingblack asterisk. Species where I only hadother DNA available have a trailingred asterisk. Species inorangeindicate extinct species that are not currently on the TiF list. Some ofthem have “ancient” DNA available, in which case they have atrailing asterisk. There are other annotations on the tree, so I'veincluded a key at the end of the tree.
Needless to say, the new phylogeny has involved some big changes. Thebasic structure still involves three subfamilies: Rallinae (which isbasal), and the sister subfamilies Fulicinae (has priority overthe previously used Gallinulinae) and Porphyrioninae. But the compositionof these has changed somewhat.
Rallinae now contains two tribes, Pardirallini (moved from Fulicinae)and Rallini. Fulicinae is also split into two tribes, the new tribeHimantornithini and the old Fulicinini (previously called Gallinulini). The last subfamily, Porphyrioninae now has three tribes: Porphyrionini(basal) followed by Laterallini and Zapornini.
The most noticeable changes involve the genera, which have balloonedfrom 43 to 56! One driving force behind this is that Garcia-R. and Matzke(2021) provide time estimates for every branch in the supplementarymaterial, which is useful when trying to decide whether a separate genus isneeded.
So how old is the rail family? Garcia-R. and Matzke (2021) don'taddress this, but Garcia-R. et al. (2014) did. They put the split betweenthe rails and flufftail/finfoot clade at about 61 mya ±9 millionyears. The high side of that range is probably too high as it is on theother side of the KT boundary. Others have also tried to address thisquestion. Figure 4 in Kirchman et al. (2021) puts it about 40 mya, witha range of roughly 32-53 mya. In Boast et al. (2019, Figure 2) it's at54 mya, with a range of about 41-70 mya. As you can see, these estimatesare not very precise!
The three subfamilies date to 25-30 mya according to Garcia-R. and Matzke,or 10 million older according to Boast et al. (2019), while Kirchman et al. (2021)prefer a date in-between those two. Again, we have no precise number,but the relative scales are still helpful in deciding which clades should be subfamilies.
Canirallus returns:Before considering the subfamilies, we first return one species tothe Rallidae. The genusCanirallus, previously placed inSarothruridae, has been split. Boast et al. (2019), Kirchman et al.(2021), and Oswald et al. (2021) found that part was in Rallidae(Canirallus), and the other part (Mentocrax) inSarothruridae. As a result,Canirallus now consists of a singlespecies, the Gray-throated Rail,Canirallus oculeus.
There is single deep division in Rallinae, that is about 24.4 millionyears old according to Garcia-R. and Matzke (2021). It divides the Rallinaeinto two tribes: Pardirallini and Rallini. There are also some lesserdivisions within Rallini, with clades, involvingRallus,Crex, andGallirallus. However, those are enough more recentthan the tribal divisions (16.5-18.5 mya) that I do not rank them as tribes(and TiF is allergic to subtribes).
TheCanirallus problem:However, I've glossed over a problem.Canirallus has been reducedto a single species, the Gray-throated Rail,Canirallus oculeus. Weneed to ask, where does it go? There are three relevant papers: Boast etal. (2019), Kirchman et al. (2021), and Oswald et al. (2021). Oswald et al.make clear thatCanirallus belongs in Rallinae, and is a fairlybasal branch, possibly the basal branch. However, they don't include anymembers of Pardirallini, so we can't say much more. Kirchman et al. (2021,Taxon Set C) put it in Rallini. Boast et al. (2019, Fig. 3) put it inPardirallini. In other words, there's a complete lack of consensus.
Can morphology help? Livezey (1998) saysCanirallus is in“a poorly resolved set of rallid genera”, which is not helpful.However, his tree suggests it is more likely in the Rallini. SincePardirallini is confined to the Americas andCanirallus is African,this makes sense (but I could tell a story the other way too). Moreover,the plumage seems more in line with Rallini that Pardirallini. In the end,I'm placing it in Rallini as the basal branch, but my confidence in this atbest medium. With that out of the way, we can now consider the two tribesof Rallinae.
Compared with the previous treatment in TiF, I've moved the Pardirallinito subfamily Rallinae where they join the Chestnut-headed Crake,Anurolimnas castaneiceps. Otherwise, the composition is unchanged,but has been rearranged a little.
Genus Changes:There are some changes of genus:
Wood-Rails: Based on Marcondes and Silveira (2015), the Russet-naped Wood-Rail,Aramides albiventris, including subspeciesmexicanus,vanrossemi,pacificus, andplumbeicollis, has been split from Gray-necked Wood-Rail,Aramides cajaneus. Both the AOS NACC and SACC have also changed thename of Gray-necked Wood-Rail to Gray-cowled Wood-Rail.
The phylogeny in Garcia-R. and Matzke (2021) suggests thatmexicana andplumbeicollis are better regarded as subspecies of the Rufous-necked Wood-Rail,Aramides axillaris rather than the Russet-naped Wood-Rail,Aramides albiventris. If this was based on DNA,I would have to take it seriously. However, this is based purelyon morphology and the calls of the birds disagree. The sound likealbiventris. If you have any doubts, consultSACC #797.If you still have doubts, listen to the songs onXeno-canto.org.
As mentioned above, Rallini loses two species to Pardirallini. It alsoloses the threeGymnocrex species to Himantornithini, but gainsGray-throated Rail,Canirallus oculeus, from Sarathruridae andRouget's Rail,Rougetius rougetii, previously consideredincertaesedis.
Virginia Rail:There is one more addition to Rallini — a split. Based on Ridgelyand Greenfield (2001) and the fact that the birds in Ecuador soundquite different from those in North America, the Virginia Rail,Ralluslimicola, is split into:
Clapper and King Rails:We also have an older split that's been in TiF for a while.Based on Maley (2012) and Maley and Brumfield (2013),King Rail,Rallus elegans, has been split into:
Further,Clapper Rail,Ralluslongirostris, has been split into:
The table below puts them in their proper order and list the subspecies and describes the ranges.
Clapper/King Rail complex | ||
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Species | Subspecies | Range |
Ridgway's Rail R. obsoletus | obsoletus,levipes,yumanensis, rhizophorae,beldingi | western US, western Mexico |
Aztec Rail R. tenuirostris | tenuirostris | central Mexico |
Mangrove Rail R. longirostris | phelpsi,margaritae*,pelodramus*, longirostris*,crassirostris*,cypereti | South America |
King Rail R. elegans | elegans,ramsdeni | eastern US and Mexico, Cuba |
Clapper Rail R. crepitans | crepitans,saturatus,waynei, scottii,insularum,pallidus*, grossi*,belizensis*,coryi, leucophaeus,caribaeus | eastern US and Mexico, Belize, Caribbean |
* = subspecies not sampled by Maley and Brumfield (2013). |
Mangrove(?) Rails have recently been discovered along the Pacific Coast ofsouthern Central America (esp. the Gulfs of Fonseca and Nicoya). There isalso a report from the Atlantic coast (Panama: Bocos del Toro). I do notknow if any have definitely identified as to subspecies, but Van Dort(2013) suggests the Pacific coast rails are Mangrove Rails. In any event, theycurrently seem to be accepted as Mangrove Rails.
Genus Changes:As of version 3.07 of this page, TiF recognizes a number of new genera in Rallini.
Woodford's Rail Complex:While studying Garcia-R and Matzke (2021) and related papers, I noticed asmall problem concerning the Woodford's Rail complex in the Garcia-R andMatzke phylogeny. So let's consider Woodford's Rail,Hypotaenidiawoodfordi. Like IOC, TiF treats as a single species with three subspecies:woodfordi,immaculata andtertia.In contrast, HBW elevates the subspecies to full speciesstatus yielding
Garcia-R. and Matzke seem to follow this too, but useGallirallusrather thanHypotaenidia. In any event, bothG. woodfordi andG. immaculatus appear on their tree.
So what's the problem? Garcia-R et al. (2014a) had previously sampledDNA from a specimen at the Burke Museum in Seattle, with the resultssubmitted to GenBank in 2013 asNesoclopeus woodfordi. It is also referred to that way in thenex files for Garcia-R. and Matzke(2021). It wasn't noted originally that the DNA sample was actuallyimmaculatus, from Isabel, Solomon Islands. It was just listed aswoodfordi from the Solomons. This is clear in the supplementarydata for the 2014a paper. In fact, the very same specimen together withanother at the Burke was previously sampled by Kirchman (2009), whocorrectly listed them asimmaculatus from Isabel, SolomonIslands.
So what this means is that for Garcia-R and Matzke,G.immaculatus has the means morphological characteristics ofimmaculatus, but no DNA, and theirG. woodfordi is an odd type ofchimera, with the morphological characteristics ofG. woodfordi butDNA ofG. immaculatus. Opps!
Sincewoodfordi seems to be in roughly the right place,genetically speaking, this has an easy fix. I put Woodford's Rail(including the subspecies) whereG. woodfordi was, and supressedG. immaculatus as an error.
There's some question about how old the branches are in the cladecontainingHypotaenidia. Kirchman (2012) argued that many of themare very young, but Garcia-R. and Matzke (2021) gave much older ages thatwould suggest using even more genera than I have used. I have compromisedhere, and consider that the currentHypotaenidia makes a reasonablycoherent group.
Kirchman argued that the genetic distances between all theGallirallus species is fairly small, and indicates a common ancestryas recently as a million or so years ago. This is amazingly recent!
I don't believe this. In particular, I think he has chosen a calibration point unwisely. He based the ages on the fact thatrails cannot have been on Wake Island for more than about 125,000 years.The idea is that Wake Island was completely submerged at that time. Whenhe applied more conventional molecular dating he obtained a much olderdate, about 7.8 million years ago, suggesting that the Wake Island Railrecently arrived from another island. This suggests a very rapid loss ofthe ability to fly. Kirchman (2012) found that the extinct Wake IslandRail's closest relative was the extinct Mangaia Rail,Gallirallusripleyi from the Cook Islands. The Mangiaia Rail is known only fromsubfossil remains that appear to be 700-1000 years old, and its date ofextinction is uncertain. It is not included on the main list, but isincluded in theRallidae tree.
Interestingly, Garcia-R. and Matzke (2021) give a different topology forthis clade and an age of approximately 1.5 million years for split betweenthe Wake Island Rail, Hypotaenidia wakensis, and the Guam Rail,Hypotaenidia owstoni (which is not its closest relative).
The extinct Sharpe's Rail,Gallirallus sharpei, is known fromone specimen from an unknown location. Kirchman (2012) did not obtainDNA from Sharpe's Rail. According to Bird LifeInternational, it is now thought to have been a color morph ofBuff-banded Rail,Gallirallus philippensis. I've not seen anypublished information on this.
The next group is the Fulicinae. Obviously, it contains the coots(Fulica). It's split into two tribes: Himantornithiniand Fulicini. Although the coots and moorhens are here, neither theswamphens nor the American Purple Gallinule are part of theFulicinae.
Himantornithini contains two genera:Himantornis andGymnocrex. Kirchman et al. (2021) is the only paper to include DNAfrom both genera. They found them to be sister genera. Garcia-R. andMatzke found the same thing, basing their conclusion on morphology ratherthan DNA. Unlike Garcia-R. and Matzke (2021), both Garcia-R. et al. (2020)and Kirchman et al. foundHimantornis sister to Fulicini, and thatis how I will treat them. This group is a distant sister of Fulicini, soI've placed them in separate tribes. Since the topology is different fromthat in Garcia-R. and Matzke, we can't get a read on the distance. However, Kirchman et al. found them intermediate in age between thePorphyrionini branch and the Laterallini/Zapornini split. Translated tothe Garcia-R. and Matzke paper, that would be an age of 26 to 28.5 millionyears.
So why do Garcia-R. and Matzke (2021) put Himantornithini sister to therest of the Rallidae? I don't know, perhaps the morphological data theyuse, combined with limited DNA causes it. Certainly, their positionning ofHimantornithini is much the same as Liverzey (1998), based purely onmorphological data. We know that weird things can happen when usingmorphological data. Garcia-R. and Matzke unintentionally demonstrate this with theNesotrochis cave-rails. They place the cave-rails next totheAramides wood-rails. In fact, there is genetic data for thecave-rails (Oswald et al., 2021). They found the cave-rails belong to the Flufftail family, Sarothruridae.
Fulicini mainly contains the moorhens/gallinules and coots, togetherwith the similar woodhens and native-hens. Fulicini also contains theremaining portion ofPorzana, after many species have beentransferred toZapornia and elsewhere. I follow Christidis and Boles(2008) and separatePareudiastes (Hartlaub and Finsch, 1871), typepacificus, andTribonyx (DuBus, 1840), typemortierii,fromGallinula.
Spot-flanked Gallinule:The Spot-flanked Gallinule, formerly inGallinula, is now in themonotypic genusPorphyriops (Pucheran 1845).Raty's reanalysis found that the Spot-flanked Gallinule,Porphyriopsmelanops, belongs nearPorzana. This makes sense as theSpot-flanked Gallinule looks much like a Sora,Porzana carolina.Garcia-R. et al. (2014), using more data, placed it as shown on the diagramand estimated that the common ancestor ofPorzana andPorphyriops lived perhaps 20 million years ago. I believe thisnumber to be somewhat exaggerated, perhaps by 40%. Even so, they wouldstill be separated by 12 million years, more than enough to put them indifferent genera. The placement sister toPorzana is supported byBoast et al. (2019), Garcia-R. et al. (2020), and Kirchman et al. (2021),using partially different gene sets, although Garcia-R. and Matzke (2021)put it in a different position.
Lesser Moorhen:The Lesser Moorhen is nowParagallinula angulata instead ofGallinula (Sangster, Garcia-R., and Trewick, 2015), typeangulata. This change was needed becauseParagallinula isbasal to bothGallinula (true gallinules and moorhens) andFulica (coots).
Common Gallinule/Moorhen:This list treats the Common Gallinule,Gallinula galeata and CommonMoorhen,Gallinula chloropus, as separate species, as does the AOU(both NACC and SACC). Groenenberg et al. (2008) found that the CommonMoorhen is more closely related to the Gough Moorhen,Gallinulacomeri, and the extinct Tristan Moorhen,Gallinula nesiotis,than to the Common Gallinule. The relationships of the rest of the formerGallinula have not been subject to genetic testing.
Caribbean Coot:Following AOU supplement 57 (2016), the Caribbean Coot,Fulicacaribaea, is now treated as a color morph of American Coot,Fulicaamericana. There was never strong evidence these were separatespecies.
Finally, if you look at the tree, you may notice Hodgen's Waterhen,Pyramida hodgenorum. It's an extinct species from New Zealand thatis not on the TiF list. The monotypic genusPyramida (Oliver, 1955)takes its name from the Pyramid Valley where many subfossil remains ofHodgen's Waterhen were found. The most recent date to the 1700's. It appearsto have once been widespread in New Zealand.
Although the swamphens are placed next to the gallinules and coots, thegenetic distance between them is quite large. Garci-R. and Matzke (2021)estimate that their most recent common ancestor lived about 28 millionyears ago. This should not now be surprising. Earlier genetic evidencehad shown they were quite separated. Ozaki et al. (2010) placed theswamphens sister to Laterallini and Trewick (1997) grouped them withZapornini. The morphological evidence has also cast doubt on the positionof the swamphens, with Livezey (1998) putting them in a relatively basalposition.
The swamphens are in the final subfamily, Porphyrioninae. In the currentedition of TiF, it contains three tribes: Porphyrionini, Zapornini, andLaterallini. The swamphen tribe Porphyrionini is basal group in subfamily Porphyrioninae.
The first tribe of Porphyrioninae, Porphyrionini, is mainly composed ofpurple gallinules (Porphyrula) and swamphens (Porphyrio). Morphological data suggests thatAphanocrex belongs in this tribetoo. Indeed, Livezey's (1998) analysis suggested that the extinct St.Helena Rail,Aphanocrex podarces, might even be embedded inPorphyrula, while Garcia-R. and Matzke's (2021) combinedmolecular/morphological analysis put them as the basal bird inPorphyrionini.
American purple gallinules:Olson (1973) had recommended that the American purple gallinule genus,Porphyrula, be merged intoPorphyrio. Trewick (1997) made agenetic case for this merger, which was adopted by AOU in 2002. However,Garcia-R and Matzke (2021) found that common ancestor of the two generalived over 8 mya. As a result, the purple gallinules
have been restored toPorphyrula (Blyth, 1852), typealleni.
Purple Swamphens:Based on the genetic analysis of Garcia-R. and Trewick (2015) and theearlier papers by Sangster (1998) and Sangster et al. (1999), the PurpleSwamphen,Porphyrio porphyrio has been split into 5 species:
The next tribe is Laterallini, the tribe of New World crakes. It'scomposition remains pretty much the same as before, except for transferringthe St. Helena Crake,Zapornia astrictocarpus (Zapornini) to genusLaterallus (GR Gray, 1855), typemelanophaius.
Rufirallus:I have resurrectedRufirallus (Bonaparte 1854, typeviridis)for the Russet-crowned Crake,Rufirallus viridis. Based solely onmorphological data, Garcia-R. and Matzke (2021) group it with theRusty-flanked Crake,Laterallus levraudi and Ruddy Crake, asRufirallus ruber. However, genetic data from Kirchman et al. (2021)indicates that the Ruddy Crake belongs elsewhere. Genetic data is almostinvariably superior. Using a sparser data set, Kirchman et al. found itcloser toalbigularis than tomelanophaius, and I haverepositioned it accordingly on the Garcia-R. and Matzke tree. I wasn'tsure whether to bringlevraudi with it. Without a compelling reasonto move it, I left it sister toviridis.
Whether the above is correct or not, the Russet-crowned Crake, typespecies ofRufirallus, is closely related to the Ocellated Crake,Micropygia schomburgkii.Micropygia andRufirallusform the basal claed in Laterallini.
More genus changes:Here are the changes of genus for the rest of Laterallini:
The next branch contains Swinhoe's and Yellow Rails (Coturnicops).
After that, the picture becomes much murkier. Stervander et al. (2019),Garcia-R et al. (2020), Garcia-R. and Matzke (2021), and Kirchman et al.(2021) have all weighed in on this, and their results can't really bereconciled. Because Garcia-R. and Matzke use the most data, I havefollowed a lightly modified form of their tree for the rest ofLaterallini.
In Garcia-R and Matzke (2021), the next branch consists of theYellow-breasted Crake,Hapalocrex flaviventer and the Gray-breastedCrake. These seem rather distinct, and are separated by about 8 millionyears (Gracia-R. and Matzke), so I've put them in separate genera.Unusually for the rails, there's no genus name available, so I'm referringto the Gray-breasted Crake as"Hapalocrex" exilis. Note thatStervander et al. (2019) have bothexilis andflaviventer inLaterallus. Further, both Garcia-R and Matzke (with morphology) andGarcia-R. et al. (2020, genes only), have the Rufous-sided Crake,Laterallus melanophaius and Red-and-white Crake,Laterallusleucopyrrhus as sister species. Kirchman et al. (2021) have a verydifferent take on this. The other papers don't consider both of them.
The rest of Laterallini are either inLaterallus orCreciscus. This includes the Black-banded Crake,Laterallusfasciatus, which has been moved fromRufirallus (orPorzana orAnurolimnas, depending on the taxonomy used). I suspect there will be further changes in the clade as the other taxa aresampled, and we may need to recut the genera too.Laterallus inGarcia-R. and Matzke is estimated to have had a common ancestor about 5 mya,so I treat it as a single genus. However, movingruber there mayhave changed matters, but that will have to wait for a more comprehensive studyof the clade.
Raty's reanalysis grouped together a few species that look like Black Rail(jamaicensis). Most importantly, it included the Speckled Rail,Creciscus notatus, which doesn't seem to be in any publishedmolecular phylogeny. The Galapagos Rail belongs here too (Chaves et al.,2020). The old nameCreciscus (Cabanis 1857, typejamaicensis) applies to the group, which also contains the AscensionCrake,Creciscus elpenor. On morphological grounds, theInaccessible Island Rail,Creciscus rogersi, and the St. HelenaCrake,Creciscus astrictocarpus also belong to this group.
The last tribe to consider is Zapornini, which combines the old Zaporniniwith almost all of the old Himantornithini,Himantornis itself excepted.Zapornini contains a number of Old World crakes, some of them once place inPorzana.
There are a number of genus changes that affect Zapornini.
There are two parts to Zapornini. The first is the remains of the old Himantornithini. This clade constains the Watercock, various Bush-hens,and the White-breasted Waterhen,Amaurornis phoenicurus.
The other part starts with what remains ofRallina. The phylogenyfor the rest is based on Slikas et al. (2002), except for the Maui Crakes,which are placed based on morphology. Amazingly, part 3 of Figure 2 formsa nice block that can just be dropped into the tree, and that is what I did.
Many of the other species in this clade were previously classified ingenusPorzana, but were then moved toZapornia (Leach 1816,typeGallinula minuta Montagu 1813 =parva). Given thegenetic distances involved, I've separated the Ruddy-breasted Crake andBand-bellied Crake in genusLimnobaenus (Sundevall 1873, typefuscus); and also the Black Crake asLimnocorax flavirostra(W. Peters, 1854) along with the Brown Crake, nowLimnocorax akool.The remaining species then fall into two groups. Again, there issubstantial distance between them, and they are the remainingZapornia and the birds just transferred toPennula.