Movatterモバイル変換

[0]ホーム
URL:

 
Ensembl mirror
Loading…
Search »
Search HumanSearch Human
Search all speciesSearch all species
Search Ensembl genomesSearch Ensembl genomes
Search VegaSearch Vega
Search EMBL-EBISearch EMBL-EBI
Search SangerSearch Sanger
Human(GRCh38.p14)▼

Favourite species

All species

Recent locations

Transcript-based displays

.

Transcript: ENST00000222122.10DBP-201

.

Description

D-box binding PAR bZIP transcription factor [Source:HGNC Symbol;Acc:HGNC:2697]

Gene Synonyms

DABP

Location
About this transcript

This transcript has4 exons, is annotated with18 domains and features, is associated with3882 variant alleles and maps to389 oligo probes.

Gene
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000222122.10DBP-2012170325aaENSP00000222122.4
 
Gene/transcipt that contains an open reading frame (ORF).Protein coding
CCDS12728Q10586NM_001352.5The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE SelectA single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl CanonicalGENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE PrimaryA subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic

APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.

APPRIS P1

TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.

TSL:1
ENST00000601104.1DBP-2051489262aaENSP00000469291.1
 
Gene/transcipt that contains an open reading frame (ORF).Protein coding
M0QXP1-GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE PrimaryA subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic

TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.

TSL:1
ENST00000593500.1DBP-202712123aaENSP00000471220.1
 
Gene/transcipt that contains an open reading frame (ORF).Protein coding
M0QXW3-A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic

TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.

TSL:2
ENST00000599385.5DBP-204709123aaENSP00000469426.1
 
Gene/transcipt that contains an open reading frame (ORF).Protein coding
M0QXW3-A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic

TSL 3: A transcript where the only support is from a single EST

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.

TSL:3
ENST00000594723.1DBP-2035756No protein-
 
An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron
--

TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.

TSL:2

.

Statistics

Exons: 4,Coding exons: 4,Transcript length: 2,170 bps,Translation length: 325 residues

MANE

This MANE Select transcript containsENSP00000222122 and matches toNM_001352.5 andNP_001343.2

Uniprot

This transcript corresponds to the following Uniprot identifiers:Q10586

CCDS

This transcript is a member of the Human CCDS set:CCDS12728

Transcript Support Level (TSL)

TSL:1

Version

ENST00000222122.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. Seearticle.

GENCODE basic gene

This transcript is a member of theGencode basic gene set.

.

Ensembl release 113 - October 2024 ©EMBL-EBIEMBL-EBI
http://asia.ensembl.org

.

.

close
[8]ページ先頭
©2009-2025 Movatter.jp