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Hi everyone, We use zarr as a backend to store data generated by a pipeline. These data take the form of counts, and metadata. We typically use As we begin to formalise, we realise we need a way to validate that a zarr store is what we are expecting. Specifically:
I've looked at pydantic and AVRO, but they don't seem to do exactly what I want. Is anyone aware of any other solutions that would enable this? Or able to provide an example? |
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Replies: 2 comments 2 replies
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I solve this problem by making pydantic models for my zarr arrays / groups: seehttps://github.com/janelia-cellmap/pydantic-zarr. I'd be curious to hear your feedback on that library. it's definitely been extremely helpful for my own work. |
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Thanks! Looks really helpful |
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Since you are using Xarray, you may also want to take a look atxarray-schema. |
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Great suggestion- wasn't aware of this... |
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