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FlowIO is a Python library for reading and writing Flow Cytometry Standard (FCS)files, with minimal dependencies and is compatible with Python 3.9+. It is intendedas a lightweight library, suitable for parsing FCS data sets (e.g. as a web serverbackend, for simple metadata extraction, etc.). For higher level cytometry analysis,please see the relatedFlowKit library whichoffers a much wider set of analysis options such as compensation, transformation,and gating support (including support for importing FlowJo 10 workspaces).

If you have any questions about FlowIO, find any bugs, or feel something is missingfrom the documentationplease submit an issue to the GitHub repository here.

The recommended way to install FlowIO is via thepip command:

pip install flowio

Or, if you prefer, you can install from the GitHub source:

git clone https://github.com/whitews/flowiocd flowiopip install .

The FlowIO API documentation is availableon ReadTheDocs here. If you have any questions about FlowIO or find any bugsplease submit an issue to the GitHub repository here.

Changelogs for versions are available here