Virtool

Viral infection diagnostics using next-generation sequencing

Getting Started

See theVirtool documentation to get started with the latestversion of Virtool 4.

Versions

Virtool is currently undergoing a major transformation into a cloud-native application. This will mean Virtool can scalework across multiple hosts and run natively in Kubernetes and public cloud providers.

Virtool 4 series should be used for now. This version will continue to receive bug and security fixes for the forseeable future.

Virtool 5 and later will comprise multiple containerized services that need to run together. A deployment and migration guide will be provided.

Support

Join us on Discord.
Create an issue on Github to report bugs, request features, make suggestions, or ask questions.

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virtoolvirtoolPublic
Viral infection diagnostics using next-generation sequencing
Python 43 22
virtool-uivirtool-uiPublic
The browser frontend for Virtool
TypeScript 4 6
virtool-workflowvirtool-workflowPublic
A framework for building Virtool workflows
Python 3 10
virtool-corevirtool-corePublic
Core utilities for Virtool and associated packages
Python 3 9

Repositories

Showing 10 of 33 repositories

ref-builder Public
Build and maintain reference sets of pathogen genome sequences.
virtool/ref-builder’s past year of commit activity
Python 2 1 0 4 UpdatedMar 27, 2025
virtool Public
Viral infection diagnostics using next-generation sequencing
virtool/virtool’s past year of commit activity
Python 43MIT 22 8 2 UpdatedMar 27, 2025
virtool-core Public
Core utilities for Virtool and associated packages
virtool/virtool-core’s past year of commit activity
Python 3MIT 9 0 0 UpdatedMar 24, 2025
ref-plant-viruses Public
An official Virtool reference for plant viruses
virtool/ref-plant-viruses’s past year of commit activity
1MIT 3 5 0 UpdatedMar 21, 2025
virtool-ui Public
The browser frontend for Virtool
virtool/virtool-ui’s past year of commit activity
TypeScript 4 6 0 0 UpdatedMar 19, 2025
ml-plant-viruses Public
A machine learning model for detecting plant viruses.
virtool/ml-plant-viruses’s past year of commit activity
10 0 0 UpdatedMar 17, 2025
workflow-iimi Public
A workflow for detecting known viruses using ML in Virtool
virtool/workflow-iimi’s past year of commit activity
Python 2 2 0 0 UpdatedMar 17, 2025
iimi Public
Virus diagnostics using machine learning
virtool/iimi’s past year of commit activity
R 2 2 1 1 UpdatedMar 6, 2025
dev Public
Developer tooling for Virtool.
virtool/dev’s past year of commit activity
Starlark 2 4 0 0 UpdatedMar 6, 2025
virtool-workflow Public
A framework for building Virtool workflows
virtool/virtool-workflow’s past year of commit activity
Python 3MIT 10 0 0 UpdatedFeb 21, 2025