vanheeringen-lab

Repository of the group of Simon van Heeringen @ Radboud University

17 followers
Nijmegen, the Netherlands
s.vanheeringen@science.ru.nl

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genomepygenomepyPublic
genes and genomes at your fingertips
Python 386 38
gimmemotifsgimmemotifsPublic
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Python 115 35
seq2scienceseq2sciencePublic
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Python 156 28
scepiascepiaPublic
Single Cell Epigenome-based Inference of Activity
Jupyter Notebook 19 2
ANANSEANANSEPublic
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
Python 82 17

Repositories

Showing 10 of 26 repositories

genomepy Public
genes and genomes at your fingertips
vanheeringen-lab/genomepy’s past year of commit activity
Python 386MIT 38 20 1 UpdatedFeb 21, 2025
GBD_data Public
Datasets for the Genomics and Big Data course
vanheeringen-lab/GBD_data’s past year of commit activity
00 0 0 UpdatedMar 19, 2024
ANANSE Public
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
vanheeringen-lab/ANANSE’s past year of commit activity
Python 82MIT 17 26 2 UpdatedMar 6, 2024
seq2science Public
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
vanheeringen-lab/seq2science’s past year of commit activity
Python 156MIT 28 23 (1 issue needs help) 3 UpdatedFeb 5, 2024
gimmemotifs Public
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
vanheeringen-lab/gimmemotifs’s past year of commit activity
Python 115MIT 35 56 5 UpdatedDec 19, 2023
anansnake Public
Automate long-running ANANSE analyses with snakemake
vanheeringen-lab/anansnake’s past year of commit activity
Python 1Apache-2.0 1 2 1 UpdatedNov 23, 2023
scepia Public
Single Cell Epigenome-based Inference of Activity
vanheeringen-lab/scepia’s past year of commit activity
Jupyter Notebook 19MIT 2 6 4 UpdatedSep 27, 2023
phylotypic_hourglass Public
vanheeringen-lab/phylotypic_hourglass’s past year of commit activity
Jupyter Notebook00 0 0 UpdatedJul 24, 2023
seq2science-FAQ Public Forked fromvanheeringen-lab/seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
vanheeringen-lab/seq2science-FAQ’s past year of commit activity
Python0MIT 28 0 0 UpdatedJun 22, 2023
GroupMeetings Public
vanheeringen-lab/GroupMeetings’s past year of commit activity
HTML0 2 0 0 UpdatedMar 3, 2023