Extracting meaningful health information from large accelerometer datasets

• UpdatedDec 20, 2024
• Python

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

• UpdatedJul 30, 2024
• Jupyter Notebook

Tofu is a Python tool for generating synthetic UK Biobank data.

• UpdatedJul 25, 2023
• Python

Graph saliency maps through spectral convolutional networks for brain mapping

• UpdatedSep 25, 2018
• Python

Sample code for ldsc analyses in UKBB

• UpdatedMay 4, 2023
• CSS

Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank

• UpdatedFeb 19, 2021

Python Software Development Kit (SDK) to process wearable sensor data

• UpdatedJan 8, 2025
• Python

A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).

• UpdatedOct 12, 2018
• R

snpnet - Efficient Lasso Solver for Large-scale genetic variant data

• UpdatedMar 5, 2024
• R

🫀 Code for "Neural network-based integration of polygenic and clinical information: Development and validation of a prediction model for 10 year risk of major adverse cardiac events in the UK Biobank cohort" 🫀

• UpdatedFeb 1, 2022
• Jupyter Notebook

Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits

• UpdatedJun 2, 2021
• Jupyter Notebook

Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data

• UpdatedAug 5, 2022
• Jupyter Notebook

Data management helper code for the UK Biobank.

• UpdatedSep 16, 2022
• Shell

Python implementation of POPDx - Predictions for unseen, rare, and common labels.

• UpdatedJun 26, 2024
• Python

Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.

• UpdatedAug 1, 2023
• Python

MultiVariate Polygenic Mixture Model

• UpdatedApr 4, 2020
• R

A PBWT-based light index for UK Biobank scale genotype data.

• UpdatedMar 17, 2025
• C++

Aid Steno Researchers Who Work on the UKB RAP.

• UpdatedMar 13, 2025
• R

Create binary traits for UKbio using ICD/OPER/medication/self reports/age of diagnosis/visit-dates etc). The current output includes variables on history, study visit, future, time-to-first-event, episode-duration. this is a starting point to construct your favorite trait in ukb. The code was written on the go, so not super clean code..

• UpdatedApr 29, 2020
• R

Identifying healthy individuals with Alzheimer neuroimaging phenotypes in the UK Biobank

• UpdatedMay 29, 2024
• Python