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#

taxonomy

Here are 623 public repositories matching this topic...

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

  • UpdatedFeb 7, 2026
  • C

A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems

  • UpdatedFeb 7, 2026
  • Python
GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  • UpdatedFeb 5, 2026
  • Python

Accurate sample inference from amplicon data with single nucleotide resolution

  • UpdatedDec 15, 2025
  • R

Bugcrowd’s baseline priority ratings for common security vulnerabilities

  • UpdatedFeb 6, 2026
  • Python

Rinvex Categorizable is a polymorphic Laravel package, for category management. You can categorize any eloquent model with ease, and utilize the power of Nested Sets, and the awesomeness of Sluggable, and Translatable models out of the box.

  • UpdatedJul 3, 2023
  • PHP

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

  • UpdatedJan 5, 2026
  • Go

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

  • UpdatedApr 25, 2025
  • C

This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].

  • UpdatedJun 11, 2025
  • Python

Application and Python module for average nucleotide identity analyses of microbes.

  • UpdatedJul 1, 2025
  • Python
OnenoteTaggingKit

OneNote (desktop) add-in to manage OneNote pages by page tags

  • UpdatedApr 25, 2023
  • C#

一个沉浸式的 3D/2D 网页可视化项目,探索哺乳动物 2 亿年的演化史诗。

  • UpdatedJan 18, 2026
  • JavaScript

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

  • UpdatedJan 2, 2026
  • C++

🐞 Convert NCBI taxonomy dump into lineages

  • UpdatedSep 26, 2025
  • Python

Sequana: a set of Snakemake NGS pipelines

  • UpdatedJan 22, 2026
  • Jupyter Notebook

Contains a list of Popoto.js examples

  • UpdatedOct 22, 2024
  • HTML
wponion

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

  • UpdatedFeb 6, 2026
  • R

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