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target-panels

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nf-core /sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

workflow bioinformatics pipeline annotation genomics nextflow cancer reproducible-research containers conda next-generation-sequencing variant-calling somatic germline whole-exome-sequencing whole-genome-sequencing pre-processing nf-core gatk4 target-panels

UpdatedMar 13, 2025
Nextflow

ash9nov /CNV-calling-from-Target-panel-based-NGS-data

Detection of CNVs (deletion/duplication) in target panel based NGS data

sliding-windows ngs-data target-panels target-region

UpdatedMay 23, 2023
R

padobrik /.BED_annotation

My implementation of algorithm for defining genes in target panel.

bioinformatics genes target-panels

UpdatedSep 28, 2022
Python

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