t2t

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AIRI-Institute /GENA_LM

Star181

GENA-LM is a transformer masked language model trained on human DNA sequence.

dna language-model genomes t2t

UpdatedJan 17, 2025
Jupyter Notebook

zengxiaofei /HapHiC

Star169

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

genome assembly hi-c scaffolding chromosome phasing salsa lachesis t2t haplotype yahs 3d-dna allhic hifiasm

UpdatedJan 24, 2025
Python

linyuiz /zgtools

Star28

zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.

pipeline genome-analysis t2t zgtools

UpdatedJan 10, 2025
HTML

dreamnotover /english_chinese_machine_translation_baseline

Star11

tensor2tensor usage

attention baseline t2t

UpdatedApr 20, 2019
OpenEdge ABL

liushoucheng /SPART

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a Semi-automated pipeline for assembling T2T genome

genome-assembly t2t

UpdatedDec 25, 2024
Python

pweidner /BamQC-pipeline

Star0

Snakemake workflow to generate BAM alignment statistics on the BIH cluster.

quality-control snakemake sequencing bam hg38 mm10 t2t

UpdatedDec 10, 2024
Python

makovalab-psu /mapsea

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Mapping And Prediction of Shared Elements in Alignments

bioinformatics pipeline genome alignment comparative-genomics g-quadruplexes t2t evolutionary-genomics

UpdatedFeb 27, 2025
Python

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