Privacy-preserving generative deep neural networks support clinical data sharing

• UpdatedApr 20, 2019
• Jupyter Notebook

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

• UpdatedDec 10, 2020
• Jupyter Notebook

Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016

• UpdatedMay 26, 2016
• Python

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

• UpdatedMar 20, 2023
• HTML

PUG Bot to use with G5API

• UpdatedDec 8, 2022
• Python

Supplement to the report inhttps://greenelab.github.io/czi-hca-report/

• UpdatedDec 4, 2018
• R

Scripts and data for re-creating TDM results.

• UpdatedMar 16, 2016
• R

This repository is in support of the PathCORE-T paper (https://doi.org/10.1101/147645). It contains all the code and necessary data/metadata to repeat all analyses in the paper.

• UpdatedJun 6, 2018
• Jupyter Notebook

Data for the Sci-Hub Stats Browser

• UpdatedNov 7, 2017
• Jupyter Notebook

Case-control genetics datasets evolved to be epistatic

• UpdatedAug 15, 2018
• PostScript

Evaluating the effect of technical sources of variability in large-scale gene expression compendia.

• UpdatedApr 7, 2021
• Jupyter Notebook

Repository associated with Song et al. manuscript describing a Network-wide Association Study of ADNI Cohorts.

• UpdatedJan 14, 2016
• Python

Methods to build a network of pathway co-occurrence relationships out of expression signatures extracted from transcriptomic compendia.

• UpdatedOct 17, 2017
• Python

PUBLICATION: High-throughput analysis of adaptation using barcoded strains of Saccharomyces cerevisiae

• UpdatedJun 11, 2021
• HTML

Forecast sales for 350+ supplement retail chain stores for next 2 months

• UpdatedOct 14, 2021
• Jupyter Notebook

A Python application to track your supplements, their quantities, and calculate cost effectiveness.

• UpdatedMar 1, 2025
• Python

This repository stores scripts and results for the case study in the ADAGE signature analysis paper.

• UpdatedMay 30, 2017
• HTML

Medication and supplements combo is a system that checks if the entered medications or supplements can be taken together or needs to be taken separately. Some medications do not have dangerous effects but can cause problems for the body to absorb them. In the system the user enters name and age then chooses if he/she wants medication or suppleme…

• UpdatedJun 28, 2021
• Java