sir-model

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je-suis-tm /graph-theory

Star395

Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Ran…

graph-theory agent-based-modeling complex-systems minimum-spanning-trees spatial-models maximal-cliques graph-coloring random-graph complex-network minimum-spanning-tree agent-based-simulation sir-model dynamic-network barabasi-albert watts-strogatz dynamic-system epidemic-model compartmental-model sars-cov-2 bianconi-barabasi

UpdatedApr 29, 2022
Jupyter Notebook

lisphilar /covid19-sir

Star112

CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

python data-science machine-learning big-data analysis python-library epidemiology sir-model epidemic-model epidemic-simulations coronavirus covid-19 covid covid19

UpdatedNov 3, 2025
Python

antonin-lfv /simulation_virus_covid-19

Star54

Simulating epidemics using Python

visualization python pie-chart virus simulation graphics plotly visualisation matplotlib epidemiology diseases infectious-diseases sir-model confinement subplots simuler covid-19 une-population sidr-model

UpdatedNov 21, 2023
Python

mattravenhall /BasicSIRModel

Star25

A simple SIR model in Python

sir-model disease-modeling

UpdatedJul 7, 2018
Python

PingEnLu /Time-dependent_SIR_COVID-19

Star19

Codes for the paper "A Time-dependent SIR model for COVID-19 with Undetectable Infected Persons"

machine-learning network-science ic-models sir-model time-dependent herd-immunity 2019-ncov coronavirus coronavirus-tracking covid-19 sars-cov-2 social-distancing covid-19-data-analysis time-dependent-sir-model asymptomatic-infection superspreader independent-cascade undetectable-infected-persons

UpdatedJun 17, 2024
Python

mjg211 /phaseR

Star15

Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems

dynamical-systems differential-equations lotka-volterra ecological-modelling phase-plane manifolds modeling-dynamic-systems sir-model van-der-pol species-interactions perturbation-analysis biological-modeling morris-lecar

UpdatedSep 2, 2022
R

p-j-r /covid-19

Star15

Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.

physics epidemiology physics-simulation lattice disease-spread random-walk stochastic-models sir-model epidemiology-analysis epidemic-simulations coronavirus coronavirus-analysis covid-19 sars-cov-2 covid-19-india

UpdatedJun 20, 2021
Jupyter Notebook

metawards /MetaWards

Star14

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

epidemiology epidemics sir-model epidemiology-analysis epidemic-model epidemic-simulations coronavirus covid-19 covid

UpdatedJul 15, 2024
Python

DemetersSon83 /Mesa-SIR

Star12

A Mesa-based ABM library for epidemiological (SIR) modeling.

agent-based-modeling epidemiology mesa agent-based-simulation sir-model agent-based-model project-mesa covid covid19

UpdatedApr 2, 2020
Python

SilverLinings89 /VirusSimulator

Star12

A virus simulation for pandemics based on the SIR-network concept.

javascript numerical-methods disease-spread sir-model sir-simulation modelling-biological-systems coronavirus coronavirus-globaloutbreak

UpdatedJun 6, 2025
TypeScript

UofUEpiBio /epiworldR

Star11

A general framework for quick epidemiological ABM models

simulation abm agent-based-modeling epidemiology r-package epidemics sir r-programming sir-model seir rpack covid-19 seir-model rpkg

UpdatedNov 5, 2025
R

paramrathour /Nonlinear-Dynamics

Star10

Files related to my Summer of Science Report on Nonlinear Dynamics

chaos barnsley-fern stability fractals julia-sets linearization bifurcation henon-map mandelbrot-sets lorenz-attractor logistic-map chaos-game sir-model newton-fractal rossler-attractor lorenz-equation lyapunov-exponents lotka-volterra-model stochastic-system index-theory

UpdatedOct 11, 2023
TeX

parulm /spread_lockdown

Star9

A GitHub repo for the generation of a network model to represent society with various components, the spread of the disease on this network, and the calculation of reproduction number on these simulation results.

social-network network disease-spread lockdown sir-model disease-prediction coronavirus covid-19 social-distancing reproduction-number