A DSL for data-driven computational pipelines

• UpdatedDec 17, 2025
• Groovy

server for storage and management of singularity images

• UpdatedJul 2, 2024
• JavaScript

Container tools for scientific computing! Docs athttps://singularityhub.github.io/singularityhub-docs

• UpdatedJun 29, 2022
• HTML

command line tool for working with singularity hub and singularity containers

• UpdatedOct 28, 2020
• Python

CoMorMent-Containers

• UpdatedDec 6, 2025
• R

example singularity definition files and demos

• UpdatedJun 14, 2018
• Shell

Intel HPC Containers using Singularity

• UpdatedJan 7, 2023

The main platform for sharing all the information about AI/HPC-related containers at C3SE. See also the included tutorial to get started.

• UpdatedDec 5, 2025

The Scientific Filesystem Specification and Documentation

• UpdatedNov 9, 2023
• CSS

singularity container tools for continuous integration and quality assessment

• UpdatedJul 20, 2023
• Python

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

• UpdatedFeb 25, 2019
• HTML

This repo holds the containers for HPC applications used and deployed by CDAC SSDG. It is a single point of contact for the container related issues or support required

• UpdatedDec 9, 2025

Various Singularity recipes I've used to generate containers

• UpdatedSep 30, 2020

Getting Started with Containers on HPC

• UpdatedNov 17, 2019
• C

Optimize workflow for binning metagenomic short reads from multiple samples

• UpdatedMar 18, 2020
• Nextflow

Scripts and notes for singularity containers used for bioinformatics analyses

• UpdatedMar 18, 2021
• Perl

web application to serve (simple) singularity images

• UpdatedMar 19, 2017
• Python

A bioinformatics pipeline that automates the Sanger amplicon sequencing data analysis of thousands of samples in parallel.

• UpdatedMar 6, 2025
• Nextflow

Singularity containers for Cylc

• UpdatedDec 29, 2019
• Roff

Modular application recipes for the Scientific Filesystem (SCIF)

• UpdatedApr 10, 2020
• CSS