sequence-analysis
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Toolkit for processing sequences in FASTA/Q formats
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Jun 1, 2025 - C
A comprehensive library for computational molecular biology
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Oct 30, 2025 - Python
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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Oct 28, 2025 - C++
Fast alignment and preprocessing of chromatin profiles
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Sep 20, 2025 - C++
Fast multi-line FASTA/Q reader in several programming languages
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Jun 6, 2021 - C
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
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Dec 1, 2024 - Python
Cython bindings and Python interface to HMMER3.
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Oct 27, 2025 - Cython
A fast multiple sequence alignment program.
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Jul 8, 2025 - C
A Python package for CD-HIT, clustering protein or nucleotide sequences.
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Nov 22, 2024 - Python
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
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Apr 15, 2024 - Python
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
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Aug 21, 2023 - Perl
Open source bioinformatics and computational biology toolbox written in F#. This is the core package containing type models and parsers/writers.
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Apr 25, 2025 - F#
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May 16, 2018 - Jupyter Notebook
Physicochemical properties, indices and descriptors for amino-acid sequences.
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Sep 4, 2025 - Python
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
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Jun 6, 2025 - Python
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
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Nov 15, 2024
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
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Oct 27, 2024 - Python
Sequence alignment tools
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Aug 7, 2024 - Julia
Tools and software library developed by the ONT Applications group
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Jan 22, 2021 - Python
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