sars-cov-2
Here are 602 public repositories matching this topic...
Language:All
Sort:Most stars
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
- Updated
Aug 23, 2024 - Python
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
- Updated
May 2, 2024 - TypeScript
Models of COVID-19 outbreak trajectories and hospital demand
- Updated
Feb 15, 2022 - JavaScript
COVID-Net Open Source Initiative
- Updated
Feb 16, 2023 - Jupyter Notebook
Folding@home COVID-19 efforts
- Updated
Oct 27, 2020 - Python
🫁 The world's first open-source ventilator tested on human patients. Mass-producible at a low cost (~2000€).
- Updated
Aug 18, 2024
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
- Updated
Mar 9, 2023 - Python
query stats of infected coronavirus cases
- Updated
Jun 10, 2021 - R
Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Ran…
- Updated
Apr 29, 2022 - Jupyter Notebook
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
- Updated
Nov 3, 2025 - Python
Ultra-deep search for novel viruses
- Updated
Mar 29, 2023 - Jupyter Notebook
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
- Updated
Nov 3, 2025 - TypeScript
A global collection of Open Source projects during COVID-19
- Updated
May 3, 2023 - Python
Unified COVID-19 Dataset
- Updated
Jun 11, 2023 - R
PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross
- Updated
Aug 31, 2024 - Jupyter Notebook
Die COVID-19-Impfung kann einen Wendepunkt in der Kontrolle der COVID-19-Pandemie darstellen und erfährt daher hohes Maß an öffentlicher Aufmerksamkeit. Einführung und Umsetzung der COVID-19-Impfung gehen mit besonderen Herausforderungen einher, die bei der Impfdatenerfassung zu berücksichtigen sind. In diesem Kontext ist es Ziel des Projekts 'D...
- Updated
Sep 3, 2025
Assembly and intrahost/low-frequency variant calling for viral samples
- Updated
Nov 3, 2025 - Nextflow
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
- Updated
Sep 25, 2025 - Jupyter Notebook
Ultrafast Sample Placement on Existing Trees
- Updated
Nov 1, 2025 - C++
Improve this page
Add a description, image, and links to thesars-cov-2 topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with thesars-cov-2 topic, visit your repo's landing page and select "manage topics."