samtools
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The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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Mar 16, 2025 - C++
WebAssembly modules for genomics
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Feb 12, 2025 - HTML
NGLess: NGS with less work
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Aug 13, 2024 - Haskell
Multi-sample somatic variant caller
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Jan 27, 2022 - R
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
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Jan 17, 2024 - Shell
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Oct 3, 2022 - Forth
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
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Nov 25, 2024 - Shell
The ChIP-Seq peak calling algorithm using convolution neural networks
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Jan 18, 2021 - Python
RNAseq pipeline for alternative splicing junctions
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Jul 29, 2024 - R
Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphoneshttps://nanoporetech.com
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Aug 2, 2021 - Java
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
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Jan 7, 2024 - Java
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
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Mar 27, 2020 - Shell
Snakemake pipeline for Popoolation and Popoolation2
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Apr 26, 2024 - Perl
Collecting Genotypes from ENA and make their SNPs
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Sep 27, 2021 - Python
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