rna-seq
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🧬 gget enables efficient querying of genomic reference databases
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Nov 1, 2025 - Python
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
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May 29, 2024 - C++
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
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Nov 3, 2025 - Python
NicheNet: predict active ligand-target links between interacting cells
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Oct 15, 2025 - R
A repository for setting up a RNAseq workflow
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Apr 10, 2017 - R
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
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Nov 5, 2025
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
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Oct 15, 2025 - Kotlin
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Oct 1, 2024 - R
Table of software for the analysis of single-cell RNA-seq data.
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Nov 6, 2025 - R
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
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Oct 30, 2025 - Nextflow
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
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Jul 12, 2024 - R
minimal example implementations for bioinformatics workflow managers
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Oct 27, 2021 - Python
Fast and accurate gene fusion detection from RNA-Seq data
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Sep 21, 2025 - C++
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