recount2

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nuno-agostinho /psichomics

Interactive R package to quantify, analyse and visualise alternative splicing

tcga gene-expression bioconductor alternative-splicing gtex survival splicing-quantification data-analyses differential-splicing-analysis rna-seq-data sra differential-gene-expression vast-tools recount2

UpdatedMar 17, 2025
R

LieberInstitute /megadepth

Star12

R interface to megadepth: BigWig and BAM related utilities

rstats bigwig bam recount2 megadepth recount3 daspter

UpdatedDec 12, 2024
R

LieberInstitute /recountWorkshop2020

Star8

BioC2020 workshop: Human RNA-seq data from recount2 and related packages

workshop rstats bioconductor derfinder recount recount2 genomicstate bioc2020 recount-brain

UpdatedDec 10, 2024
HTML

LieberInstitute /marchionni_projects

Star3

Collaboration with Luigi Marchionni (JHU) and RIKEN with recount2 data

rstats biorxiv recount lncrna fantom fantom5 recount2 fantom6

UpdatedNov 5, 2019
Shell

LieberInstitute /recount3-docs

Star2

Documentation for all things related to `recount3`

human mouse rstats bioconductor rnaseq recount hg38 recount2 mm10 recount3

UpdatedDec 13, 2024
R

lcolladotor /recount-brain-bog19

Sponsor

Star0

Poster for Biology of Genomes 2019 (#bog19) on recount-brain

sample metadata public poster curated tcga human rnaseq gtex reproducibility brain recount sra recount2 bog19

UpdatedAug 23, 2019
HTML

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