protein-sequence
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Standardized data set for machine learning of protein structure
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Nov 18, 2020 - Python
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
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Oct 28, 2025 - Python
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
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Jun 16, 2021 - Python
Learning the language of protein-protein interactions
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Sep 22, 2025 - Python
ProtFlash: A lightweight protein language model
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Mar 2, 2024 - Python
A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
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Jan 11, 2025 - Python
De novo protein structure prediction using iteratively predicted structural constraints
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Jan 30, 2022 - C
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
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Mar 24, 2021 - Jupyter Notebook
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
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Mar 3, 2025 - Python
A Python 3 version of the protein descriptor package propy
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Feb 8, 2023 - Python
Guided Conditional Wasserstein GAN for De Novo Protein Design
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Feb 23, 2021 - Roff
MOLeculAR structure annoTator
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Oct 2, 2024 - JavaScript
Web application for protein-ligand binding sites analysis and visualization
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Jan 9, 2023 - JavaScript
Python Toolbox For Rosetta Silent Files Processing
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May 23, 2019 - Python
A curated list of awesome protein design research, software and resources.
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May 10, 2022
Deep learning based alignment-free method for protein family modeling and prediction
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Jul 31, 2018 - Python
A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
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Feb 27, 2025 - Python
Simple visualisation tool for sequences' similarity in bioinformatics
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Apr 12, 2018 - Python
A curated list of awesome Molecular Modeling And Drug Discovery 🔥
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Jul 21, 2022
Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
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May 5, 2024 - HTML
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