🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations

• UpdatedMay 21, 2024
• JavaScript

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

• UpdatedMar 28, 2019
• Python

SWift and Optimized Recognition of protein Domains

• UpdatedSep 23, 2024
• Perl

Estimate PTM hotspots in protein sequence alignments

• UpdatedFeb 6, 2019
• Python

A suite of tools to build and search generalized profiles

• UpdatedJun 7, 2023
• C

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

• UpdatedMar 10, 2023
• Python

dom2vec: Protein domain embeddings

• UpdatedJan 27, 2021
• Python

👐 TADOSS: TAndem DOmain Swap Stability predictor

• UpdatedJul 10, 2020
• Python

An automated method to map yeast variants to proteins modifications and functional regions

• UpdatedOct 20, 2017
• Python

FAS - Tool for Feature Architecture Similarity calculation

• UpdatedMar 14, 2025
• Python

Comparison of protein learning

• UpdatedMay 19, 2022
• Jupyter Notebook

protein domain prediction

• UpdatedJun 13, 2022
• Python

UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).

• UpdatedOct 29, 2021
• Rust

DrugDomain database

• UpdatedJan 30, 2025
• Python

Profile hidden Markov model (HMM) to identify the Kunitz domain in protein sequences, using MSA-guided training and optimization.

• UpdatedJul 1, 2024
• Python

Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.

• UpdatedSep 7, 2021
• Python

Protein-RNA docking benchmark v3.0

• UpdatedMar 19, 2025
• Jupyter Notebook

Refining Domain Boundaries and Performing Large Scale Parsing

• UpdatedSep 13, 2020
• Jupyter Notebook

THIS PROJECT IS NO LONGER SUPPORTED See Brivez Instead!!https://github.com/furacca/brivez/ - ------------------------------------------ - Cuterle is a bioinformatic tool which return an output file containing every domain annotated by InterProScan via Pfam or SMART analysis from the list of protein submitted.

• UpdatedJul 6, 2022
• Python

CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.

• UpdatedJun 20, 2023
• Common Workflow Language