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#

pirna

Here are 11 public repositories matching this topic...

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

  • UpdatedJan 16, 2025
  • Perl

piRNA cluster prediction and analysis framework

  • UpdatedJun 22, 2018
  • Python

get smallRNAseq summary in piclusters, transposons and genes from bed2 files generated by piPipes or other softwares

  • UpdatedApr 4, 2018
  • R

miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs

  • UpdatedAug 11, 2023
  • Python

miRSim Synthetic Sequence Simulator

  • UpdatedMay 10, 2023
  • Jupyter Notebook

Characterization of small RNA pathways

  • UpdatedMar 18, 2025
  • R

piRNA IPdb

  • UpdatedMar 22, 2022
  • Shell

A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.

  • UpdatedMar 30, 2024
  • C++

A little script that looks for piRNA clusters based on small RNA library coverage

  • UpdatedMar 31, 2024
  • C++

Fully automated analysis pipeline for planarian piRNAs

  • UpdatedAug 2, 2023

The scripting part of my Dissertation with the data analysis of all the datasets I used

  • UpdatedAug 8, 2022

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